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csv files
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Way to create a flowframe from a .csv file (non-FACS data)
annotateddataframe
csv files
6.3 years ago
tbi
• 0
1
vote
1
reply
1.3k
views
biomaRt getBM() function does not recognize gene ID character vector values generated from csv file for annotation
biomart
getBM()
csv files
annotation
ensembl
updated 6.5 years ago by
Mike Smith
★ 6.6k • written 6.5 years ago by
agdif
▴ 10
0
votes
0
replies
1.1k
views
Use "gating.template" on data.table
data.table
opencyto gating
csv files
R
7.6 years ago
Rivka
• 0
0
votes
1
reply
1.5k
views
isobar and iTRAQ data
iTRAQ
file conversion
csv files
mzxml files
.raw files
10.1 years ago
queso012
• 0
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Comment: Incorporating Salmon offset matrix into Wilcoxon DEG analysis
by
Andre
• 0
I edited the previous post. I meant to remove the estimateGLMRobustDisp line in the second snipper : ```` DGE_list_object <- estimateGLMR…
Comment: Incorporating Salmon offset matrix into Wilcoxon DEG analysis
by
Gordon Smyth
52k
Sorry, I had forgotten estimateGLMDisp() produces weights as well as NB dispersions. The weights from estimatGLMRobustDisp() were intended …
Answer: Mean variance curve troubleshoot filtering
by
Gordon Smyth
52k
You could use `filterByExpr()`, as recommended by Law et al (2018) and in the limma and edgeR case studies. However, the main problem wi…
Comment: How do I fix an odd voom plot in a combined dataset?
by
Gordon Smyth
52k
You will get NA coefficients from `~Group+Batch` because the Group factor is completely confounded with the batch factor.
Comment: How do I fix an odd voom plot in a combined dataset?
by
1sunmic2
• 0
Thanks for responding! I did change the code slightly: dge1 <- DGEList(counts = combined_data_counts) keep <- rowSums(cpm(dge1)…
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Comment: Comparing different method for DESEQ2
Answer: How do I fix an odd voom plot in a combined dataset?
Answer: How do I fix an odd voom plot in a combined dataset?
Comment: How do I fix an odd voom plot in a combined dataset?
C: How does edgeR cpm function calculate log(CPM) values?
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