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Showing :
crisprseek
•
reset
0
votes
1
reply
735
views
extendedSequences length is not the required for DeepCpf1 (34bp)
CRISPRseek
2.5 years ago
Miguel
• 0
0
votes
5
replies
3.7k
views
Error in data.frame(..., check.names = FALSE) : arguments imply differing number of rows
CRISPRseek
3.0 years ago • updated 2.9 years ago
Miguel
• 0
1
vote
2
replies
1.1k
views
CRISPRseek package: offTargetAnalysis() error with mouse genome
CRISPRseek
3.1 years ago • updated 3.0 years ago
nderian
▴ 10
0
votes
2
replies
1.0k
views
CRISPRseek package: findgRNAs error
CRISPRseek
3.1 years ago
nderian
▴ 10
4
votes
3
replies
1.1k
views
Improving the run-time of offTargetAnalysis()
CRISPRseek
updated 3.6 years ago by
Daniel
• 0 • written 4.1 years ago by
xenon
▴ 40
0
votes
2
replies
954
views
CRISPRseek package: 5’ PAM?
CRISPRseek
3.7 years ago
nderian
▴ 10
2
votes
7
replies
3.1k
views
CRISPRseek Error in .Call2("solve_user_SEW0", start, end, width, PACKAGE = "IRanges") interpretation
CRISPRseek
4.1 years ago • updated 4.0 years ago
xenon
▴ 40
1
vote
1
reply
867
views
Using a DNAStringSet of guideRNA+PAM sequences in offTargetAnalysis()
CRISPRseek
updated 4.1 years ago by
Julie Zhu
★ 4.3k • written 4.1 years ago by
xenon
▴ 40
4
votes
1
reply
955
views
CRISPRSeek Results files column interpretation
CRISPRseek
updated 4.1 years ago by
Julie Zhu
★ 4.3k • written 4.1 years ago by
xenon
▴ 40
0
votes
1
reply
770
views
CRISPRseek base editor
CRISPRseek
updated 4.2 years ago by
Julie Zhu
★ 4.3k • written 4.2 years ago by
s.islambey
• 0
6
votes
14
replies
2.4k
views
gRNAefficacy calculations in CRISPRseek
crisprseek
crispr
gRNAefficacy
grna
updated 4.3 years ago by
Julie Zhu
★ 4.3k • written 4.3 years ago by
Dawid G. Nowak
▴ 40
3
votes
10
replies
1.7k
views
CRISPRseek OffTargetAnalysis Warning: Error in Hash and NAs introduced by coercion
CRISPRseek
Error in hash
NAs introduced by coercion
updated 4.6 years ago by
Julie Zhu
★ 4.3k • written 4.6 years ago by
nils.hassel
• 0
0
votes
2
replies
937
views
gRNA design for prime editing using CRISPRseek
CRISPRseek
pegRNA
prime editing gRNA
updated 4.6 years ago by
Julie Zhu
★ 4.3k • written 4.6 years ago by
giti_gazisoltani
• 0
0
votes
5
replies
1.3k
views
CRISPRseek help to generate gRNAs for CRISPRi library
CRISPRseek
updated 5.1 years ago by
Julie Zhu
★ 4.3k • written 5.1 years ago by
Lucka387
• 0
0
votes
1
reply
978
views
CRISPRseek - adding CRISPRscan score
CRISPRseek
updated 5.1 years ago by
Julie Zhu
★ 4.3k • written 5.1 years ago by
ptgriffin
• 0
6
votes
12
replies
2.1k
views
CRISPRseek ERROR, can't read featureWeightMatrix in, wrong data format
CRISPRseek
software error
5.1 years ago
nils.hassel
• 0
0
votes
4
replies
1.2k
views
CRISPRseek:::findgRNAs paired gRNAs with PAM inward orientation
CRISPRseek
paired gRNA
updated 5.5 years ago by
Julie Zhu
★ 4.3k • written 5.5 years ago by
saba.parvez
• 0
0
votes
2
replies
2.5k
views
CRISPRseek question on scoring
CRISPRseek
10.4 years ago • updated 5.8 years ago
Julie Zhu
★ 4.3k
1
vote
1
reply
901
views
CRISPRSeek module output - summary file: topN.offtargettotalscore
CRISPRSeek
updated 5.8 years ago by
Julie Zhu
★ 4.3k • written 5.8 years ago by
Nan
• 0
5
votes
11
replies
1.7k
views
CRISPRseek Unusual Error
crisprseek
updated 5.9 years ago by
Julie Zhu
★ 4.3k • written 5.9 years ago by
Dawid G. Nowak
▴ 40
0
votes
2
replies
1.6k
views
Problem installing CRISPRseek
crisprseek
updated 6.2 years ago by
Julie Zhu
★ 4.3k • written 6.2 years ago by
ldumas9
• 0
0
votes
1
reply
1.1k
views
CRISPRseek: offTargetAnalysis -> buildFeatureVectorForScoring increase max.mismatch error
crisprseek
offtargetanalysis
updated 6.4 years ago by
Julie Zhu
★ 4.3k • written 6.4 years ago by
jacob.bradford
• 0
1
vote
2
replies
1.1k
views
A unexpected error occurred when using CRISPRseek package
crisprseek
updated 6.5 years ago by
Julie Zhu
★ 4.3k • written 6.5 years ago by
prokaryote23
• 0
1
vote
2
replies
1.1k
views
How to understand Summary.xls in output of CRISPRseek
crisprseek
updated 6.5 years ago by
Julie Zhu
★ 4.3k • written 6.5 years ago by
Ou, Jianhong
★ 1.3k
4
votes
12
replies
2.0k
views
CFDscore calculations used in CRISPRseek
crisprseek
CFDscore
updated 6.5 years ago by
Julie Zhu
★ 4.3k • written 6.5 years ago by
Dawid G. Nowak
▴ 40
0
votes
5
replies
1.7k
views
CRISPRseek offTargetAnalysis errors
CRISPRseek
6.9 years ago
joyce
• 0
0
votes
0
replies
1.6k
views
replacement has X rows, data has Y rows
crisprseek
7.0 years ago
robert_w_link
• 0
0
votes
1
reply
1.2k
views
CRISPRseek offTargetAnalysis error
crisprseek
updated 7.0 years ago by
Julie Zhu
★ 4.3k • written 7.0 years ago by
joyce
• 0
0
votes
1
reply
1.4k
views
CRISPRseek gRNA efficacy
crisprseek
updated 7.1 years ago by
Julie Zhu
★ 4.3k • written 7.1 years ago by
joyce
• 0
0
votes
2
replies
1.1k
views
Does CRISPRSEEK work on previously unknown genomes?
crisprseek
unknown genome
updated 7.2 years ago by
Julie Zhu
★ 4.3k • written 7.2 years ago by
yhuang2
• 0
0
votes
6
replies
2.0k
views
CRISPRseek CFD score
crisprseek
updated 7.2 years ago by
Julie Zhu
★ 4.3k • written 7.2 years ago by
joyce
• 0
0
votes
1
reply
1.5k
views
could not find function "hash"
crisprseek
updated 7.2 years ago by
Julie Zhu
★ 4.3k • written 7.2 years ago by
joyce
• 0
5
votes
24
replies
3.9k
views
CRISPRseek scoring clarification
crisprseek
updated 7.2 years ago by
Julie Zhu
★ 4.3k • written 7.8 years ago by
elspeth.ransom
• 0
0
votes
1
reply
1.1k
views
CFD scores for searchHits?
crisprseek
updated 7.2 years ago by
Julie Zhu
★ 4.3k • written 7.2 years ago by
joyce
• 0
0
votes
0
replies
961
views
Interpretation of Score vs gRNA efficacy
crisprseek
7.3 years ago
robert_w_link
• 0
0
votes
0
replies
1.3k
views
Off Target region
offtarget analysis
crisprseek
7.3 years ago
susobhanbaidya
• 0
0
votes
1
reply
1.6k
views
Compareequence function is not running
software error
compilation error
CRISPRseek
updated 7.4 years ago by
daniel.vantwisk
▴ 50 • written 7.4 years ago by
susobhanbaidya
• 0
0
votes
2
replies
1.3k
views
"NNG[A|G][A|G]N$" in CRISPRseek code
crisprseek
SaCas9
PAM
7.4 years ago
bhanson1806
• 0
2
votes
3
replies
1.9k
views
offTargetAnalysis() Error in weights %*% mismatch.pos : non-conformable arguments (CRISPRSeek)
CRISPRseek
updated 7.4 years ago by
Julie Zhu
★ 4.3k • written 7.4 years ago by
robert_w_link
• 0
0
votes
1
reply
1.2k
views
CRISPRseek How to get a correct result of searchHits2 ?
crisprseek
graph
updated 7.4 years ago by
Julie Zhu
★ 4.3k • written 7.4 years ago by
liuyue235
• 0
1
vote
8
replies
2.0k
views
CRISPRseek with genome not available in BSgenome
bsgenome
crisprseek
updated 7.5 years ago by
Julie Zhu
★ 4.3k • written 7.8 years ago by
millepattes.intersites
• 0
0
votes
3
replies
1.3k
views
CRISPRseek with Doench 2016 scores
crisprseek
updated 7.5 years ago by
Julie Zhu
★ 4.3k • written 7.5 years ago by
pavitrarc
▴ 20
0
votes
1
reply
1.1k
views
tilling sgRNA library design
bioconductor
crisprseek
updated 7.7 years ago by
Julie Zhu
★ 4.3k • written 7.7 years ago by
renxj2008
• 0
0
votes
6
replies
1.7k
views
CRISPRseed gRNA.pattern is not producing expected result
crisprseek
updated 7.8 years ago by
Julie Zhu
★ 4.3k • written 7.8 years ago by
prp291
• 0
0
votes
5
replies
1.7k
views
CRISPRseek prediction of truncated Nme sgRNA and getting error message
crisprseek
updated 7.8 years ago by
Julie Zhu
★ 4.3k • written 7.8 years ago by
Daniel
• 0
0
votes
38
replies
4.2k
views
running off target analaysis
crisprseek
7.8 years ago
Yap-JM
• 0
0
votes
2
replies
1.2k
views
CRISPRseek offTargetAnalysis score
bioconductor
crisprseek
offtarget analysis
8.2 years ago
Marie
• 0
0
votes
3
replies
1.3k
views
CRISPRseek Ouput File Name
CRISPRseek
OutputFileName
updated 8.2 years ago by
Julie Zhu
★ 4.3k • written 8.2 years ago by
bhanson1806
• 0
0
votes
1
reply
1.3k
views
Help with CRISPRseek inputFilePath
CRISPRseek
input files
updated 8.2 years ago by
Julie Zhu
★ 4.3k • written 8.2 years ago by
bhanson1806
• 0
3
votes
2
replies
1.4k
views
CRISPRseek with (rough) Draft Genome
crisprseek
grna searching
bsgenome forge
offtarget analysis
updated 8.5 years ago by
Hervé Pagès
16k • written 8.5 years ago by
rajewski23
• 0
50 results • Page
1 of 1
Recent ...
Replies
Comment: Cross-validation with multiple control subgroups in limma
by
Ali Barry
▴ 40
Thanks so much for taking the time here, the insights are much appreciated. I suspected I'd have to ad hoc compare results if I did repeat …
Answer: Cross-validation with multiple control subgroups in limma
by
Gordon Smyth
52k
limma doesn't do cross-validation or resampling. Like most classical linear modeling procedures in statistics, limma uses a statistical mod…
Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio
by
Robert Castelo
★ 3.4k
Hi Hervé, thank you very much for your input into how to properly build and manage TxDb objects. gDNAx has two main inputs, one or more BAM…
Comment: Biostrings: Error writing long reads (>200 kbps) with writeQualityScaledXStringS
by
Aidan
▴ 60
Quick update: this is fixed in a branch awaiting PR to Biostrings (https://github.com/Bioconductor/Biostrings/pull/122). Should be in `deve…
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by
Michael Love
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For statistical analysis plans, I recommend working with a local statistician or someone familiar with linear models in R. I have to reserv…
Votes
Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio
C: edgeR and lack of counts ID on CPM matrix
A: DESeq2 Following RSEM
A: importing RSEM data into DESeq2
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