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crispr
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Job:
Research Scientists/Postdoctoral Candidates/Computational Biologists and Programmers excited about computational challenges in modeling CRISPR genome…
CRISPR
SingleCell
Genomics
2.8 years ago
lpinello
• 0
0
votes
2
replies
1.6k
views
Using edgeR to analyze Cripsr/Cas9 Screening data
edger
processamplicons
sgrna
crispr
updated 16 months ago by
hyejo
• 0 • written 6.3 years ago by
Assa Yeroslaviz
★ 1.5k
2
votes
3
replies
1.1k
views
Independent filtering of NGS data
independentfiltering
DESeq2
CRISPR
3.4 years ago
Rubén
• 0
6
votes
14
replies
2.2k
views
gRNAefficacy calculations in CRISPRseek
crisprseek
crispr
gRNAefficacy
grna
updated 3.8 years ago by
Julie Zhu
★ 4.3k • written 3.8 years ago by
Dawid G. Nowak
▴ 40
1
vote
0
replies
976
views
Job:
Postdoc/Bioinformatician Research Fellow @ Harvard Medical School/MGH/ Boston's Children Hospital
CRISPR
functional genomics
single cell
gene regulatory networks
Job
3.9 years ago
bauer
▴ 10
0
votes
0
replies
1.0k
views
Job:
Scientist 1, Bioinformatics (Research | Berkeley, CA | Full Time)
Bioinformatics
drug-discovery
RNA-seq
CRISPR
Job
3.9 years ago
yzhang
• 0
0
votes
19
replies
2.3k
views
Help with using CRISPRseeker
CRISPR
updated 4.8 years ago by
Julie Zhu
★ 4.3k • written 4.9 years ago by
sharvari gujja
▴ 40
0
votes
1
reply
1.5k
views
EdgeR: run processAmplicons without barcodes
EdgeR
CRISPR
Barcode
processamplicons
updated 6.1 years ago by
sdalin
• 0 • written 7.3 years ago by
neggersjasper
• 0
0
votes
4
replies
2.2k
views
Adaptation of DESeq/edgeR model for CRISPR drop-out screen
crispr
edger
deseq
deseq2
updated 6.7 years ago by
Aaron Lun
★ 28k • written 6.7 years ago by
emanuelvgoncalves
• 0
0
votes
2
replies
1.3k
views
How to start CrispRVariants with fastq file starting point
R
crispr
fastq
7.6 years ago
kfburbach
• 0
0
votes
6
replies
1.8k
views
Manipulating random CRISPR sequences
r
crispr
updated 8.1 years ago by
mousheng xu
▴ 10 • written 8.7 years ago by
shane
• 0
1
vote
1
reply
1.4k
views
CRISPRseek R package: description of output fields that are unclear
crisprseek
R
CRISPR
sgRNA
updated 8.4 years ago by
Julie Zhu
★ 4.3k • written 8.4 years ago by
alexgraehl
▴ 20
2
votes
27
replies
4.2k
views
CRISPRseek package: be aware that as of Oct 2015, CRISPRseek works best for for regions < 200kb
crisprseek
sgrna
crispr
cas9
R
8.8 years ago • updated 8.7 years ago
alexgraehl
▴ 20
13 results • Page
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Comment: Mapping Between GenBank ID's and Uniprot
by
James W. MacDonald
66k
Also, ``` > result <- mapUniProt( from = "EMBL-GenBank-DDBJ_CDS", to = "UniProtKB", query = c("ACF95883.1") ) > result From…
Comment: Mapping Between GenBank ID's and Uniprot
by
James W. MacDonald
66k
Ugh, here's the link https://www.uniprot.org/id-mapping/uniprotkb/dd08aa16774d98ef087dc3bd708582012bba49e2/overview?fields=accession%2Cre…
Answer: Mapping Between GenBank ID's and Uniprot
by
James W. MacDonald
66k
The input should be 'EMBL-GenBank-DDBJ_CDS", as that is a GenBank ID.
Answer: XCMS2 of orbitrap data
by
Elodie
• 0
Hi, I have the same question, I have acquired MS2 data with PRM analysis and inclusion lists of several ions. I have a list of product ion…
Answer: unreal negative log2fc values
by
ATpoint
★ 4.2k
I don't see why this is unrealistic. A logFC of -10 is about -1000 on normal scale. The rough difference between the mean of these counts p…
Votes
Answer: EPIC array hg38 annotation?
Answer: Why does DESeq2 give negative log2 fold change in treatment vs control for some
Comment: Error while installing BiocManager::install("org.Vdahliae.eg.db")
Comment: Ranking the GSEA Results
Error in `$<-.data.frame`(`*tmp*`, "dispersion", value = NA)
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