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Comment: Controlling for batch and estrus cycle using DESeq2 in RNA-seq analysis
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donnycrimson
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One potential workaround might be to adjust for these factors using a combination of design matrices perhaps including batch as a covariate…
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donnycrimson
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On a lighter note, while you are tackling such complex data, you might enjoy a quick break playing the [Slope Game](https://slopegame.lol)…
Comment: MetaDE.pvalue: Error in xj[i]: invalid subscript type 'list'
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donnycrimson
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Have you considered streamlining how you handle data input to mitigate these issues. It might help to define the parameters more strictly …
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Carolina
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There is, the overlap that reads out is ( Genes in common: 368 of 368 ). Here is the link for [background genes][1], [term2gene][2], [term2…
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My two cents. I think it would be more straightforward if you use cellmeans model. Have a look at [A guide to creating design matrices for …
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