Bioconductor Crispr

Showing : crispr • reset

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CRISPR SingleCell Genomics

3.4 years ago lpinello • 0

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1.8k

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edger processamplicons sgrna crispr

updated 2.0 years ago by hyejo • 0 • written 6.9 years ago by Assa Yeroslaviz ★ 1.5k

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1.3k

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independentfiltering DESeq2 CRISPR

4.1 years ago • updated 4.0 years ago Rubén • 0

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2.5k

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crisprseek crispr gRNAefficacy grna

updated 4.5 years ago by Julie Zhu ★ 4.3k • written 4.5 years ago by Dawid G. Nowak ▴ 40

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1.1k

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CRISPR functional genomics single cell gene regulatory networks Job

4.5 years ago bauer ▴ 10

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1.3k

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Bioinformatics drug-discovery RNA-seq CRISPR Job

4.5 years ago yzhang • 0

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2.7k

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CRISPR

updated 5.5 years ago by Julie Zhu ★ 4.3k • written 5.5 years ago by sharvari gujja ▴ 40

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1.7k

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EdgeR CRISPR Barcode processamplicons

updated 6.8 years ago by sdalin • 0 • written 7.9 years ago by neggersjasper • 0

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2.6k

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crispr edger deseq deseq2

updated 7.3 years ago by Aaron Lun ★ 28k • written 7.3 years ago by emanuelvgoncalves • 0

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1.5k

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R crispr fastq

8.2 years ago kfburbach • 0

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2.1k

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r crispr

updated 8.7 years ago by mousheng xu ▴ 10 • written 9.3 years ago by shane • 0

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1.6k

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crisprseek R CRISPR sgRNA

updated 9.0 years ago by Julie Zhu ★ 4.3k • written 9.1 years ago by alexgraehl ▴ 20

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4.8k

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crisprseek sgrna crispr cas9 R

9.4 years ago • updated 9.3 years ago alexgraehl ▴ 20

13 results • Page 1 of 1

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Answer: SingleR with multiple single cell references by Aaron Lun ★ 28k

> Is it necessary to piece together the individual steps manually (e.g. aggregateReference, trainSingleR, classifySingleR, combineRecompute…

Answer: Automatically install dependencies by ATpoint ★ 4.7k

The BiocManager, which is sort of an extended wrapper around `install.packages`, installs all R dependencies. If you see errors then this i…

Answer: To count or not to count multi-overlapping reads? by Gordon Smyth 52k

> How does it handle reads that map to a gene that is located in a region that also has another gene but on the alternate strand? Overlapp…

Comment: Weird p-values using DESeq2? by ATpoint ★ 4.7k

This does not look like normalized counts but raw counts. Consider using `counts(dds, normalized = TRUE)` or the output of `normTransform()…

Answer: Weird p-values using DESeq2? by Wolfgang Huber ★ 13k

Dear Ingrid, thank you for asking. Can you provide the input count matrix (you can "pseudonymize" the biological conditions and the gene n…

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A: Fraction count for multi mapping reads; how to generate input file for Deseq2 fo

Comment: Weird p-values using DESeq2?

Comment: Overcoming confounding in batch effect correction

Answer: Store Matrix in DataFrame Cell

Answer: enrichGOgradient color change

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