Bioconductor Cpg

Showing : cpg • reset

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1.1k

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SBE CpG minfi CpGinterrogation

16 months ago kyj2226 • 0

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495

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MEDIPS CpG

19 months ago greta • 0

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1.6k

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CpG MEDIPS

6.5 years ago saripalligautam86 ▴ 10

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1.8k

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annotatr cpg

updated 6.5 years ago by rcavalca ▴ 140 • written 6.5 years ago by soli5 • 0

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1.7k

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CpG CpG sites CpG dinucleotides

updated 7.7 years ago by Hervé Pagès 16k • written 7.7 years ago by ibetfer3 • 0

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CpG

updated 8.0 years ago by James W. MacDonald 68k • written 8.0 years ago by ericotorrieri • 0

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2.6k

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CpG

10.2 years ago • updated 10.1 years ago Tiphaine Martin ▴ 40

7 results • Page 1 of 1

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Comment: Cannot extract size factor from DESeq2 analysis by s.malik • 0

Dear Mike, using tximeta and following code, is this fine to extract normalized counts after `sizeFactors(dds)` gives NULL? `dds <- DESeq…

Comment: Design formula for circadian time-course data for vst() function by Vishnu • 0

Thank you so much for your reply.

Comment: Analyzing TnSeq data with DESeq2 by Tom • 0

[Doncaster Locksmith][1] delivers trusted, efficient security services tailored to your needs. Analyzing TnSeq data with DESeq2 may uncover…

Answer: Design formula for circadian time-course data for vst() function by ATpoint ★ 4.8k

This was asked before: https://support.bioconductor.org/p/9148734/#9148812 Take-home message is that influence is minor, as you see your…

Comment: Filtering after DESeq by caroline.zanchi • 0

... I did it. It does filter out quite a bit of genes : ``` keep <- filterByExpr(dds, group="host_treatment_generation",min.count = 10, mi…

Votes

A: DESeq2::sizeFactors() function does not output the sizeFactor table.

Comment: Filtering after DESeq

A: Normalized counts from DESeq2 results in similar but not equal total read count?

A: DESeq2: Different Dispersions for different sample groups

A: Contrasts & coefficients in limma

Awards • All

Great Question to inzirio ▴ 10