Showing : cpg • reset
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What is the meaning of "CpG interrogation" and "single nucleotide extension(SBE)"?
SBE CpG minfi CpGinterrogation
13 months ago kyj2226 • 0
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CpG coverage with MEDIPS
MEDIPS CpG
16 months ago greta • 0
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4
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1.5k
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CpG density in MEDIPS
CpG MEDIPS
6.3 years ago saripalligautam86 ▴ 10
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CpG site not annotated with annotatr
annotatr cpg
updated 6.3 years ago by ▴ 140 • written 6.3 years ago by • 0
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CpG Sites // CG dinucleotides
CpG CpG sites CpG dinucleotides
updated 7.4 years ago by 16k • written 7.4 years ago by • 0
1
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1
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How to get the all CpG sites genome postion for hg19
CpG
updated 7.7 years ago by 67k • written 7.7 years ago by • 0
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Compute the CpG content for all chromosome like the percentage of G+C
CpG
9.9 years ago • updated 9.8 years ago Tiphaine Martin ▴ 40
7 results • Page 1 of 1
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Comment: Is there a way to do DEG analysis across two batches sharing one sample only? by georgeyu703 • 0
Michael, Thank you very much!
Comment: Is there a way to do DEG analysis across two batches sharing one sample only? by Michael Love 43k
Yes, with the knowledge that, it is expected to be underpowered.
Comment: Is there a way to do DEG analysis across two batches sharing one sample only? by georgeyu703 • 0
Thank you, Michael. How? Could you provide more details? Can I just do it as usual, I mean to include batch in the model?
Answer: Is there a way to do DEG analysis across two batches sharing one sample only? by Michael Love 43k
The short answer is yes, you can use even a single sample to estimate the batch effect (and therefore control for it in otherwise confounde…
Comment: How to sort negative log2FC or FC in RNAseq for GSEA? by alserg ▴ 280
`NES > 0` means that your gene set has more genes with positive logFC/stat. In your case these genes should be up in Subset1. However, if y…
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