Bioconductor Coseq

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coseq

2.7 years ago JaneDoe • 0

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coseq

updated 3.0 years ago by andrea.rau ▴ 80 • written 3.0 years ago by ajwijeratne1 • 0

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coseq RNAseq clustering

updated 5.1 years ago by andrea.rau ▴ 80 • written 5.1 years ago by minyaaa9058 ▴ 40

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coseq rna-seq

updated 6.0 years ago by andrea.rau ▴ 80 • written 6.0 years ago by varunorama • 0

4 results • Page 1 of 1

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Comment: Can't post a question? by DavideSant • 0

Thank you, this was super useful!

Comment: Error in retrieving clinical data by silickas • 0

Thank you for the reply. I will try to do that next time. This time instead, I used the GenomicDataCommons package to download clinical dat…

Comment: deseq2 lfc shrinkage with few DEGs by Robert • 0

I'm dealing with a similar situation. I assume the coefficients related to batch effect would need to be included in idx also, is this corr…

Comment: [ChIP-seq] DESeq2 on counts matrix from union set of called peaks by Luca • 0

Thank you so much!! Yeah I had thought about this too, regarding the fact that DiffBind is a wrapper for counting peaks in this way in R di…

Comment: DESeq2 testing ratio of ratios (RIP-Seq, CLIP-Seq, ribosomal profiling) by aitor • 0

Hi everyone. I have a RIP-Seq analysis with 3 conditions and 3 assays (IP, IgG and Input for each of them). 4 replicates for each conditio…

Votes

Comment: Can't post a question?

Answer: Limma - Complex 2-way multi-level contrast with paired samples

Answer: [ChIP-seq] DESeq2 on counts matrix from union set of called peaks

Help with creation of an OrgDB package and conduction of a bioinformatical analysis of gene expression

Answer: Loading Ensembl 98 EnsDb from Annotation Hub fails with database disk image malf

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