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copy number
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0
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948
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cn.MOPS output - mean/median of what?
cn.MOPS
CNV
copy number
5.1 years ago
liorglic
▴ 10
0
votes
1
reply
1.8k
views
how to analyze CNV data
copy number
7.7 years ago
mms140130
• 0
0
votes
0
replies
931
views
How to combine CGHcall objects
cghcall
r
cgh
copy number
7.9 years ago
kitcurtius
• 0
1
vote
1
reply
1.6k
views
Batch Correction and Normalization for champ.CNA
bioconductor
ChAMP
copy number
batch effect
normalization
updated 8.1 years ago by
rasmus.rydbirk
▴ 10 • written 8.1 years ago by
apmishra
• 0
0
votes
0
replies
1.2k
views
champ.CNA error (Error in sort(abs(diff(genomdat)))[1:n.keep])
ChAMP
champ
copy number
8.2 years ago
apmishra
• 0
2
votes
9
replies
3.0k
views
Calling amplifications and deletions from CopywriteR output
CopywriteR
copy number
updated 9.1 years ago by
t.kuilman
▴ 170 • written 9.2 years ago by
smcnulty
• 0
0
votes
0
replies
1.1k
views
Why are the raw copy numbers maxed at 5 and minned at 0 ?
crlmm
copy number
10.0 years ago
kforner
• 0
7 results • Page
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Comment: DESeq2 - human data, weird results, troubleshooting
by
bd2000
▴ 30
I didn't include all of my code the post would be too long. Here's a link to my GitHub if anyone would like to see the full code: [Full Rst…
Answer: DESeq: Gene is not flagged as differentially expressed despite count data showin
by
James W. MacDonald
68k
The simple answer is that the within-group variability is much higher for the first gene as compared to the second. The Wald statistic is j…
Comment: DESeq: Gene is not flagged as differentially expressed despite count data showin
by
ATpoint
★ 4.8k
> since there doesn't seem to be as much count variability, No? Your CD45 samples range on normalized scale from 2 to 3255. That's 3 orde…
Comment: Ensembl site unresponsive via biomaRt
by
darylruiz6545
• 0
Thank you so much for sharing the link.
Comment: compute_fasta_digest does not match Salmon index hash
by
Alex
• 0
I use the `fastaDigest` tool from [COMBINE-lab/fastaDigest](https://github.com/COMBINE-lab/FastaDigest/), which has the function `compute_f…
Votes
Answer: DESeq: Gene is not flagged as differentially expressed despite count data showin
Two EPIC Methylation Array Analysis Questions
How to get DMR for Infinium methylation EPIC v2
A: GEOquery Fails to Download Series Matrix File
Comment: Gene IDs conversion between Ensembl and NCBI nomenclature for non-model species
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