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copy number
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0
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0
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864
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cn.MOPS output - mean/median of what?
cn.MOPS
CNV
copy number
4.7 years ago
liorglic
▴ 10
0
votes
1
reply
1.7k
views
how to analyze CNV data
copy number
7.3 years ago
mms140130
• 0
0
votes
0
replies
860
views
How to combine CGHcall objects
cghcall
r
cgh
copy number
7.5 years ago
kitcurtius
• 0
1
vote
1
reply
1.4k
views
Batch Correction and Normalization for champ.CNA
bioconductor
ChAMP
copy number
batch effect
normalization
updated 7.7 years ago by
rasmus.rydbirk
▴ 10 • written 7.7 years ago by
apmishra
• 0
0
votes
0
replies
1.1k
views
champ.CNA error (Error in sort(abs(diff(genomdat)))[1:n.keep])
ChAMP
champ
copy number
7.8 years ago
apmishra
• 0
2
votes
9
replies
2.8k
views
Calling amplifications and deletions from CopywriteR output
CopywriteR
copy number
updated 8.7 years ago by
t.kuilman
▴ 170 • written 8.8 years ago by
smcnulty
• 0
0
votes
0
replies
1.1k
views
Why are the raw copy numbers maxed at 5 and minned at 0 ?
crlmm
copy number
9.6 years ago
kforner
• 0
7 results • Page
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Recent ...
Replies
Comment: Differential Expression Analysis with unbalanced batches without replication bet
by
Thili
• 0
Thank you for your reply. I currently have batch-corrected data processed with scvi-tools (specifically, totalvi) and have followed the sam…
Comment: Problem at champ.load
by
andrew.gibbons
• 0
I'd love to know if anyone has a workaround too. I've tried rolling back ChAMP and R to the previous versions that others have said work wi…
Comment: ESTMATE, MCPcounter, EPIC, xCell input
by
Kang
• 0
These are not, as far as I know, bioconductor packages. You should query on the websites for those specific software programs. @[mapquest][…
Comment: Robust way of dealing with low number of samples for Differential Gene Expressio
by
Kang
• 0
I believe that pseudo-bulking is a strong way to approach DE, as long as it is possible to reliably identify the cell type across data and …
Comment: GOstats kegg analysis in wheat - help - none of the objects in the first column
by
GV Yoshikawa
• 0
Thank you for the reply. I tried swapping columns before asking, it made no difference. head(keggframeData) path_id kegg…
Votes
A: Up/Down Regulated GeneList from edgeR and R
A: Up/Down Regulated GeneList from edgeR and R
A: Down/Up-regulated genes asymmetry in edgeR differential expression analysis
Answer: Combining RNAseq and microarray data using edgeR/limma-voom
Answer: How do I merge a list of GRanges?
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