Bioconductor Copy number

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cn.MOPS CNV copy number

4.8 years ago liorglic ▴ 10

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copy number

7.4 years ago mms140130 • 0

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863

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cghcall r cgh copy number

7.5 years ago kitcurtius • 0

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bioconductor ChAMP copy number batch effect normalization

updated 7.7 years ago by rasmus.rydbirk ▴ 10 • written 7.7 years ago by apmishra • 0

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1.1k

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ChAMP champ copy number

7.8 years ago apmishra • 0

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2.8k

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CopywriteR copy number

updated 8.7 years ago by t.kuilman ▴ 170 • written 8.8 years ago by smcnulty • 0

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1.1k

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crlmm copy number

9.7 years ago kforner • 0

7 results • Page 1 of 1

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Comment: Identical samples after deseq2 batch effect removal by Michael Love 42k

Oh, i didn't realize there is another method in the mix here. I would not necessarily trust this "batch correction" method, and suspect o…

Comment: Identifying potentially associated gene set to drug response using GSVA by Kent • 0

Hi @robertc thanks for the reply. I should have explained to you the context first. I am testing over a hundred drugs on patient samples (s…

Answer: BiocNeighbours Utility for k-Nearest Neighbour Classification by James W. MacDonald 67k

You can easily answer this question yourself. ``` > library(BiocPkgTools) Loading required package: htmlwidgets > depdf <- buildPkgDe…

Answer: HilBertVis install error by James W. MacDonald 67k

It appears you have compiler flags set that preclude you from compiling (-Werror=format-security). If I install `HilbertVis` on my work box…

Comment: Identical samples after deseq2 batch effect removal by maripane • 0

Thanks Michael for quick reply. Actually, I also questioned this but later i saw this issue happens within another cluster and different c…

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A: TopGO: How to retrieve the gene list related to a GO ID ?

A: Error in DESeqDataSet : some values in assay are not integers

A: correcting the batch effects in Limma and SVA

A: Using of limma moderated t-test with "corrected" expression matrix resulting fr

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