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copy number
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779
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cn.MOPS output - mean/median of what?
cn.MOPS
CNV
copy number
4.4 years ago
liorglic
▴ 10
0
votes
1
reply
1.6k
views
how to analyze CNV data
copy number
7.0 years ago
mms140130
• 0
0
votes
0
replies
781
views
How to combine CGHcall objects
cghcall
r
cgh
copy number
7.1 years ago
kitcurtius
• 0
1
vote
1
reply
1.3k
views
Batch Correction and Normalization for champ.CNA
bioconductor
ChAMP
copy number
batch effect
normalization
updated 7.3 years ago by
rasmus.rydbirk
▴ 10 • written 7.3 years ago by
apmishra
• 0
0
votes
0
replies
1.0k
views
champ.CNA error (Error in sort(abs(diff(genomdat)))[1:n.keep])
ChAMP
champ
copy number
7.4 years ago
apmishra
• 0
2
votes
9
replies
2.5k
views
Calling amplifications and deletions from CopywriteR output
CopywriteR
copy number
updated 8.4 years ago by
t.kuilman
▴ 170 • written 8.4 years ago by
smcnulty
• 0
0
votes
0
replies
970
views
Why are the raw copy numbers maxed at 5 and minned at 0 ?
crlmm
copy number
9.3 years ago
kforner
• 0
7 results • Page
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Comment: Ranking the GSEA Results
by
Lluís Revilla Sancho
▴ 730
You can have the ranking without the cutoff. If you don't keep any gene set after the cutoff then there is nothing to rank as you said, so…
Answer: Create a Graph w/ Only the Genes Interaction
by
Antonio
• 0
Thank you all, I solved my issue by creating a for loop. Cheers!
Comment: Ranking the GSEA Results
by
alserg
▴ 270
Apparently, it sends a notification to the developer on a new message after the tags were updated :) but not the change of tags itself
Comment: Ranking the GSEA Results
by
alserg
▴ 270
Where did you see ranking of genes by `log2FC * (-log10 p-value)`? I don't think I ever saw one and not sure what it should achieve. Aren't…
Comment: Trouble Installing DADA2 (warning: R new user)
by
shepherl
3.9k
As far as this ERROR for Bioc requires R version, Bioconductor is closely tied to an R release. Depending if you tried to use a premade s…
Votes
Comment: Ranking the GSEA Results
Error in `$<-.data.frame`(`*tmp*`, "dispersion", value = NA)
ChiPseeker package: plotAnnoPie identical colors for peakAnnoList features
Comment: How to get the DMR?
Answer: Using both voom and removeBatchEffect, will they double adjust the data or is it
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