Bioconductor Cooler

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diffHic GenomicInteractions edgeR HiC cooler

updated 4.5 years ago by Aaron Lun ★ 28k • written 4.5 years ago by Marco Blanchette ▴ 30

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Answer: help documentation for keytypes in annotationdbi packages by Eric ▴ 10

Hello, this post is quite old, but I was running into the same issue as I was unclear on what each keytype looks like. Thank you @kayla.int…

Comment: Group-specific condition effects with individuals nested: matrix is not full ra by picasa1983 • 0

sorry I made a typo in my table (now edited). The donor 4 actually has the 2 conditions: KO and WT. I tried something, could it be the rea…

Comment: Group-specific condition effects with individuals nested: matrix is not full ra by ATpoint ★ 4.7k

The problem is that donor 4 is nested with condition since it is KO for both the donor 4 samples. Removing that and then making a new donor…

Comment: Group-specific condition effects with individuals nested: matrix is not full ra by James W. MacDonald 68k

What happens if you remove the columns of all zeros?

Comment: Error in retrieving clinical data by boidnoid • 0

I was having the same problem. You can check the answer in a [previous post][1]. Specifically, reinstalling the devel version from GitHub …

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Answer: Plot title for PCA in DESeq2

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