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conumee CopyNumberVariation MethylationAnalysis methylationArrayAnalysis EPICv2manifest

updated 8 weeks ago by James W. MacDonald 68k • written 8 weeks ago by luca.mangherini • 0

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250

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conumee CopyNumberVariation MethylationArrayData

8 weeks ago Adam • 0

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726

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Conu conumee

updated 6 weeks ago by zpingfeng • 0 • written 10 months ago by idatta1 • 0

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717

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conumee

updated 10 months ago by idatta1 • 0 • written 11 months ago by Maximus ▴ 10

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MethylationEPICv2.0 conumee

updated 5 months ago by fraober • 0 • written 2.1 years ago by luca.s ▴ 50

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IlluminaHumanMethylationEPICanno.ilm10b2.hg19 conumee

updated 3.8 years ago by James W. MacDonald 68k • written 3.8 years ago by diego.bardiaux • 0

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IlluminaHumanMethylationEPICmanifest minfi conumee

updated 4.0 years ago by volker hovestadt ▴ 40 • written 4.1 years ago by theresa.walder • 0

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conumee

4.1 years ago melpag • 0

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conumee CNV 450K

7.2 years ago bird.of.clockwise • 0

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4.8k

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conumee

updated 16 months ago by Mingkee • 0 • written 7.8 years ago by yura.grabovska ▴ 30

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Comment: How can I correctly use phyloseq with Docker? by James W. MacDonald 68k

You can use [bioc-run][1] to simplify things as well. [1]: https://github.com/Bioconductor/bioc-run/tree/devel

Comment: How can I correctly use phyloseq with Docker? by James W. MacDonald 68k

You show how you modified the container, but not how you are running it, which is the critical part.

Comment: Discrepancies in normalised count data vs unnormalised by AMgroup • 0

Thank you for your reply. > Per sample all counts are scaled by the same size factor so I strongly assume that something was parsed here …

Comment: Discrepancies in normalised count data vs unnormalised by ATpoint ★ 4.8k

Please show examples using `plotCounts()`. Custom spreadsheets harbor the risk of parsing errors along the way which very often explains wh…

Comment: Cannot extract size factor from DESeq2 analysis by s.malik • 0

Dear Mike, using tximeta and following code, is this fine to extract normalized counts after `sizeFactors(dds)` gives NULL? `dds <- DESeq…

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Answer: How to combine two DESeq2 objects (dds) for analysis

How to combine two DESeq2 objects (dds) for analysis

How can I correctly use phyloseq with Docker?

A: DESeq2::sizeFactors() function does not output the sizeFactor table.

Comment: Filtering after DESeq

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