Showing : contrasts • reset
3
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3
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338
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DESeq2: Contrast for two conditions combined versus one condition (A+B_vs_C)
DESeq2 contrasts
updated 9 weeks ago by ★ 4.2k • written 9 weeks ago by ▴ 10
2
votes
3
replies
367
views
edgeR, 3 x 2 design with a batch effect and contrasts
design edgeR contrasts
updated 3 months ago by 51k • written 3 months ago by • 0
0
votes
3
replies
764
views
Multiple Testing When Using Multiple Contrasts/Comparisons in DESEQ2
MultipleComparison DESeq2 Genetics contrasts RNASeq
updated 11 months ago by 66k • written 11 months ago by • 0
1
vote
2
replies
601
views
Individual DESeq2 runs versus a single DESeq2 run with contrasts produce different results
contrasts DESeq2
12 months ago jovel_juan ▴ 30
3
votes
6
replies
1.1k
views
Question about making Contrasts for comparisons and assignment of values
edgeR contrasts limma design model.matrix
18 months ago mohammedtoufiq91 ▴ 10
1
vote
3
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699
views
Limma F-statistic identical for different comparison, why?
limma F-statistic contrasts
updated 20 months ago by 51k • written 20 months ago by • 0
3
votes
8
replies
3.6k
views
DESeq2 how to specify contrast to test difference of differences
DifferentialExpression contrasts interaction DESeq2
written 2.2 years ago by ▴ 10
0
votes
3
replies
1.4k
views
limma voom contrasts
contrasts limma voom
updated 2.3 years ago by 51k • written 2.3 years ago by ▴ 90
0
votes
1
reply
771
views
DESeq2 2x3 design contrast question
DESeq2 contrasts
updated 2.4 years ago by 42k • written 2.4 years ago by • 0
0
votes
2
replies
1.0k
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limma voom; fitted lines, factors that aren't of interest, and hypothesis testing
topTable voom contrasts
2.8 years ago James • 0
0
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3
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1.1k
views
DESeq2: difficulty with contrasts and main effects
DESeq2 phyloseq contrasts
updated 2.9 years ago by ★ 3.9k • written 2.9 years ago by • 0
2
votes
8
replies
2.2k
views
DESeq2 numbers of DEGs not consistent with PCA plot
DifferentialExpression DESeq2 contrasts
3.1 years ago Jane ▴ 10
3
votes
8
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1.3k
views
Same contrasts returning different edgeR results
edger limma contrasts DGE
updated 4.5 years ago by 66k • written 4.5 years ago by • 0
0
votes
1
reply
1.1k
views
DESeq2 - how to run contrasts leaving out one factor, not just using the reference?
deseq2 contrasts reference level
updated 4.6 years ago by 42k • written 4.6 years ago by • 0
0
votes
0
replies
712
views
EdgeR: Transforming coefficients before testing for differential expression
edger contrasts model.matrix circadian
4.6 years ago ingerslev • 0
0
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1
reply
1.2k
views
DESeq2 very complex design - how extract contrasts of interest?
DESeq2 RNA-Seq Multifactorial Design GLM Contrasts
updated 4.6 years ago by 42k • written 4.6 years ago by • 0
2
votes
3
replies
1.4k
views
DESeq2 2x2 factorial design: find genes unique to factor A?
deseq2 deseq differential expression contrasts
updated 4.6 years ago by 42k • written 4.6 years ago by ▴ 180
0
votes
4
replies
1.0k
views
Setting up contrasts with 'limma', patient data, small number of repeats
limma nanostring contrasts
updated 4.8 years ago by 51k • written 4.8 years ago by • 0
0
votes
1
reply
704
views
DESeq2 compairson of 3 samples from 1 type
deseq2 multiple factor design contrasts experimental design
updated 5.1 years ago by 42k • written 5.1 years ago by • 0
3
votes
5
replies
1.5k
views
Experimental design RNAseq differential expression
edger limma design contrasts batch
updated 5.3 years ago by ★ 28k • written 5.3 years ago by ▴ 40
2
votes
6
replies
1.2k
views
Making sense out of makeContrasts and using coefficents for contrasts
edger contrasts
updated 5.4 years ago by 51k • written 5.4 years ago by • 0
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Thank you very much for your detailed reply, this was a big help. Just in case others come across this problem in the future, the code did …
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C: ChiPseeker package: plotAnnoPie identical colors for peakAnnoList features
Help with error running DiffBind
Comment: Difference between enrichGO results and Enrichr website results
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Unable to install the package "tissuesGeneExpression"
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