Bioconductor Consensus

Showing : consensus • reset

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replies

601

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blockwiseconsensusModules WGCNA consensus

20 months ago Levi • 0

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1.6k

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Network consensus sampledBlockwiseModules resampling WGCNA

updated 3.0 years ago by Peter Langfelder ★ 3.0k • written 3.0 years ago by Caleb Bostwick ▴ 30

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1.8k

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consensus BAM

updated 5.2 years ago by Hervé Pagès 16k • written 5.2 years ago by O. William McClung • 0

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1.3k

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DiffBind consensus

updated 5.6 years ago by Rory Stark ★ 5.2k • written 5.6 years ago by aviv.de-morgan • 0

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1.5k

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SC3 plot consensus marker heatmap

updated 6.1 years ago by Vladimir Kiselev ▴ 150 • written 6.1 years ago by shaktirielland • 0

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1.3k

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wgcna wgcna package consensus

6.3 years ago 2323982403 ▴ 60

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2.0k

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diffbind consensus

8.0 years ago pabla86 • 0

7 results • Page 1 of 1

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Comment: contrast matrix design for a continuous variable by dtzhu337 • 0

Hi Gordon, Thank you very much for your answer. Actually the variable X is the age, which I am also interested in. Somehow, age and V1 are…

Answer: SingleCellExperiment convenience function for metadata+expression? by Peter Hickey ▴ 740

Hi Sarah, `scuttle::makePerCellDF()` / `scuttle::makePerFeatureDF()` and `scater::ggcells()` / `scater::ggfeatures()`, which build upon th…

Comment: How to sort negative log2FC or FC in RNAseq for GSEA? by QN ▴ 10

Thank you ATpoint for your response! In the result of GSEA, like you indicated, there will be gene sets that have positive NES and gene se…

Comment: EdgeR Biological CVs by ATpoint ★ 4.6k

"Joseph" is a spam bot...

Answer: How to sort negative log2FC or FC in RNAseq for GSEA? by ATpoint ★ 4.6k

GSEA asks whether there are general shifts in gene expression towards certain terms. Hence, you would not split your results tables but ord…

Votes

How to correct for tumor purity using DESeq2 to analyze TCGA tumor sample expression.

Answer: EdgeR Biological CVs

Answer: Error in download.file for TCGAutils::symbolsToRanges

Answer: Differential expression of protein coding ENSGs (Ensembl IDs) | When to biomaRt?

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Popular Question to Peter Hickey ▴ 740