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5
votes
5
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4.9k
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BiomaRt connection error: Could not connect to mysql database ensembl_mart_104
biomaRt connection sql
updated 3.5 years ago by ▴ 80 • written 3.5 years ago by ▴ 10
0
votes
4
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1.5k
views
how can I configure my proxy to get connected to biomart
biomart connection host
6.8 years ago Bioinformatics ▴ 30
9
votes
9
replies
4.1k
views
biomaRt error when connecting to host
biomart host connection
updated 7.6 years ago by ★ 6.6k • written 7.6 years ago by ★ 1.5k
2
votes
3
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1.6k
views
Unable to retrieve sequences using biomaRt::getsequence()
biomart R connection
updated 8.6 years ago by 67k • written 8.6 years ago by • 0
0
votes
0
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1.2k
views
Error in readCtData
htqpcr readctdata connection readlines
8.6 years ago lizhensor • 0
5 results • Page 1 of 1
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Comment: Help with RSEM counts: do I transpose matrix? by NB • 0
OK thank you.
Comment: Help with RSEM counts: do I transpose matrix? by James W. MacDonald 67k
You can ask here, but please read the `DESeq2` vignette first, which should answer most questions.
Comment: Help with RSEM counts: do I transpose matrix? by NB • 0
Thank you. If I have questions about QC/normalization, do I ask them here or ask a new question?
Answer: Help with RSEM counts: do I transpose matrix? by James W. MacDonald 67k
Yes. Samples in columns and genes in rows.
Comment: Issues with BSgenome.Mmusculus.UCSC.mm39 and generating motif matrix in Signac ( by James W. MacDonald 67k
It's not informative except for me to say I was right that it's `getSeq` that is providing the error. It appears that `AddMotifs` is passin…
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Answer: Detecting genomic signatures of drug resistance breast cancer in transcriptom
Comment: Issues with BSgenome.Mmusculus.UCSC.mm39 and generating motif matrix in Signac (
Answer: Issues with BSgenome.Mmusculus.UCSC.mm39 and generating motif matrix in Signac (
Comment: does anyone how to create rarefaction curves from a phyloseq object?
Answer: ANOVA like approach of edgeR
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