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Showing :
confounding
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reset
1
vote
6
replies
2.1k
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adjusting for confounding effects in edgeR
edger
confounding
updated 5.0 years ago by
Aaron Lun
★ 28k • written 5.0 years ago by
Victoria
• 0
0
votes
0
replies
1.1k
views
Possible confounding of variable of interest with batch covariate and Partial NA coefficients when including batch in limma linear model for microarr…
limma
batch effect
design matrix
microarray
confounding
7.2 years ago
svlachavas
▴ 830
8
votes
3
replies
2.8k
views
[Limma] Testing continuous variable with interaction
limma
voom
continuous
interactions
confounding
7.8 years ago
lanhuong
▴ 20
1
vote
9
replies
3.7k
views
LIMMA for paired analysis with adjustment for confounding continuous variables
limma
gene expression
confounding
adjustment
paired
8.7 years ago
Loodramon
• 0
0
votes
4
replies
1.8k
views
Use of confounders in downstream analysis
limma
GSA
confounding
within-pair analysis
450k
9.2 years ago
Aileen Bahl
▴ 10
5 results • Page
1 of 1
Recent ...
Replies
Comment: Ranking the GSEA Results
by
Lluís Revilla Sancho
▴ 730
You can have the ranking without the cutoff. If you don't keep any gene set after the cutoff then there is nothing to rank as you said, so…
Answer: Create a Graph w/ Only the Genes Interaction
by
Antonio
• 0
Thank you all, I solved my issue by creating a for loop. Cheers!
Comment: Ranking the GSEA Results
by
alserg
▴ 270
Apparently, it sends a notification to the developer on a new message after the tags were updated :) but not the change of tags itself
Comment: Ranking the GSEA Results
by
alserg
▴ 270
Where did you see ranking of genes by `log2FC * (-log10 p-value)`? I don't think I ever saw one and not sure what it should achieve. Aren't…
Comment: Trouble Installing DADA2 (warning: R new user)
by
shepherl
3.9k
As far as this ERROR for Bioc requires R version, Bioconductor is closely tied to an R release. Depending if you tried to use a premade s…
Votes
Comment: Ranking the GSEA Results
Error in `$<-.data.frame`(`*tmp*`, "dispersion", value = NA)
ChiPseeker package: plotAnnoPie identical colors for peakAnnoList features
Comment: How to get the DMR?
Answer: Using both voom and removeBatchEffect, will they double adjust the data or is it
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