Bioconductor Computational

Showing : computational • reset

votes

replies

477

views

JobPosting computational statistics

10 months ago Andy Lynch ▴ 120

votes

replies

970

views

postdoc Computational Bioinformatics Biology Genomics

21 months ago yuzun • 0

vote

replies

970

views

computational teaching statistics research

2.4 years ago Andy Lynch ▴ 120

votes

replies

1.0k

views

Computational Bioinformatics

3.3 years ago Arch • 0

votes

replies

1.0k

views

computational genomic big data bioinformatics Job

5.6 years ago jmaanaki • 0

votes

replies

1.2k

views

bioinformatics scientist python computational Job

5.9 years ago careers • 0

6 results • Page 1 of 1

Recent ...

Replies

Comment: Incorporating Salmon offset matrix into Wilcoxon DEG analysis by Gordon Smyth 52k

Sorry, I cannot follow what you're saying. The two code sequences you show look to be exactly the same.

Answer: Mean variance curve troubleshoot filtering by Gordon Smyth 52k

You could use `filterByExpr()`, as recommended by Law et al (2018) and in the limma and edgeR case studies. However, the main problem wi…

Comment: How do I fix an odd voom plot in a combined dataset? by Gordon Smyth 52k

The fact that you have partial NA coefficients indicates that your merged dataset consists in good part of NAs for a very large number of g…

Comment: How do I fix an odd voom plot in a combined dataset? by 1sunmic2 • 0

Thanks for responding! I did change the code slightly: dge1 <- DGEList(counts = combined_data_counts) keep <- rowSums(cpm(dge1)…

Comment: Incorporating Salmon offset matrix into Wilcoxon DEG analysis by Andre • 0

The estimateGLMRobustDisp() function seems to have an effect on glmQLFit(), even in edgeR 4 (4.4.1). If I use estimateGLMRobustDisp(), like…

Votes

Answer: How do I fix an odd voom plot in a combined dataset?

Comment: How do I fix an odd voom plot in a combined dataset?

C: How does edgeR cpm function calculate log(CPM) values?

Awards • All