Bioconductor Complex-design

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limma complex-design paired design

updated 7.0 years ago by Aaron Lun ★ 28k • written 7.0 years ago by ML18 ▴ 10

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rnaseqpower sspa sample size sequencing complex-design

updated 9.1 years ago by m.van_iterson ▴ 20 • written 9.1 years ago by roser.navarro • 0

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limma paired samples complex-design

9.3 years ago • updated 9.2 years ago aec ▴ 90

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limma model matrix limma design matrix complex-design

updated 9.8 years ago by Aaron Lun ★ 28k • written 9.8 years ago by Guido Hooiveld ★ 4.1k

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deseq2 multiple factor design complex-design

updated 10.1 years ago by Michael Love 43k • written 10.1 years ago by sifujio • 0

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combat software error rnaseq complex-design

updated 10.5 years ago by Peter Langfelder ★ 3.0k • written 10.5 years ago by Stefano Mangiola ▴ 40

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edgeR complex-design

updated 10.5 years ago by James W. MacDonald 68k • written 10.5 years ago by lwc628 ▴ 20

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Comment: DESeq: Gene is not flagged as differentially expressed despite count data showin by ATpoint ★ 4.8k

> since there doesn't seem to be as much count variability, No? Your CD45 samples range on normalized scale from 2 to 3255. That's 3 orde…

Comment: Ensembl site unresponsive via biomaRt by darylruiz6545 • 0

Thank you so much for sharing the link.

Comment: compute_fasta_digest does not match Salmon index hash by Alex • 0

I use the `fastaDigest` tool from [COMBINE-lab/fastaDigest](https://github.com/COMBINE-lab/FastaDigest/), which has the function `compute_f…

Comment: Question on displaying color photo as Greyscale in EBImage by Albert • 0

great and very nice

Comment: European Bioconductor Conference 2023 planning by Pandora • 0

The [Tag Game][1] is not just a simple chase; it involves strategy and tactics as players must think quickly to avoid being tagged. Various…

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Two EPIC Methylation Array Analysis Questions

How to get DMR for Infinium methylation EPIC v2

A: GEOquery Fails to Download Series Matrix File

Comment: Gene IDs conversion between Ensembl and NCBI nomenclature for non-model species

what the test method for enrichGO in clusterProfiler?

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