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5

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7

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3.9k

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deseq2 comparison batch

updated 4.1 years ago by Joana.silvestre • 0 • written 5.4 years ago by amin.ghareyazi • 0

0

votes

1

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1.7k

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deseq2 comparison design paired treatment

updated 5.1 years ago by swbarnes2 ★ 1.4k • written 5.1 years ago by tinglec • 0

5

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13

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3.2k

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DESeq2 DEG ANOVA Batch effect Comparison

updated 5.4 years ago by Michael Love 43k • written 5.4 years ago by amin.ghareyazi • 0

3 results • Page 1 of 1

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Comment: ChAMP.DMR error - Error in makeGenomicRatioSetFromMatrix by O'Brien • 0

Consult the ChAMP.DMR documentation for more information on supported array types and expected data formats: https://bioconductor.org/packa…

Answer: combining raw counts and estimated counts by O'Brien • 0

It is possible to combine raw counts from TCGA and estimated counts from GEO datasets (Kalisto pseudoalignment) while mitigating batch effe…

Comment: Packages don't update, but no error or warning is thrown by neighsanlo • 0

This is useful information.

Comment: Perform gene set enrichment analysis using fgsea on two conditions that don't ha by freemanmclaughlin9969289 • 0

Tools such as Pathway Analysis with Deweighting of Overlapping Genes ([block blast][1]) or Gene Set Enrichment Analysis for Single Cell RNA…

Comment: How to get around the warning message: mzR has been built against a different Rc by Nan • 0

Hello, I was wondering if you were able to resolve this issue? I've recently encountered a similar problem and would like to ask for your a…

Votes

C: edgeR and lack of counts ID on CPM matrix

A: DESeq2 Following RSEM

A: importing RSEM data into DESeq2

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