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Answer: WGCNA
by
ATpoint
★
4.8k
> I would like to ask whether it would make sense to first normalize the count data using DESeq2 and VST before performing WGCNA.
This …
Answer: cannot download atena annotation for human
by
Robert Castelo
★
3.4k
Hi, sorry for the delay in getting back to you, probably by now you found the solution yourself, but just in case you didn't or anybody els…
Answer: Comparison of results obtained from a subset of the data versus the complete dat
by
swbarnes2
★
1.4k
In general, using the entire dataset and then just comparing the subgroups you want within the whole dataset is preferable.
Comment: Differential expression analysis using two TCGA datasets
by
ATpoint
★
4.8k
If these are two different batches then they're fully confounded making it statistically invalid. Biologically, I find it at least question…
Answer: PhD scholar
by
ATpoint
★
4.8k
Hi, please consider asking this at biostars.org as here we're mainly answering precise technical questions towards the packages. You are se…
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