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coexpression
•
reset
0
votes
0
replies
1.1k
views
Sample size on Differential Network Analysis
coexpression
WGCNA
4.1 years ago
Hanna
▴ 10
15
votes
17
replies
28k
views
WGCNA: What is `soft thresholding`?
wgcna
network analysis
network
correlation
coexpression
updated 4.4 years ago by
Lluís Revilla Sancho
▴ 760 • written 8.6 years ago by
jol.espinoz
▴ 40
1
vote
1
reply
2.2k
views
WGCNA gene clusters vs eigengenes
wgcna
network
coexpression
eigengenes
updated 5.6 years ago by
Gordon Smyth
52k • written 5.6 years ago by
bioming
▴ 10
5
votes
3
replies
2.9k
views
Adjusting for known covariates before coexpression analysis with WGCNA
wgcna
coexpression
sva
updated 5.9 years ago by
Peter Langfelder
★ 3.0k • written 5.9 years ago by
mikhael.manurung
▴ 280
3
votes
7
replies
3.0k
views
novice: building gene co-expression network using RNA-Seq data
rna-seq
WGCNA
deseq
method
coexpression
updated 7.0 years ago by
Peter Langfelder
★ 3.0k • written 7.0 years ago by
7kemZmani
▴ 10
0
votes
0
replies
1.1k
views
Principle in selecting the "appropriate" merging value for module generation
wgcna
module
mergecutheight
coexpression
7.1 years ago
tarun2
• 0
0
votes
1
reply
1.4k
views
Differential Coexpression Analysis
differential analysis
differential gene expression
coexpression
correlation
updated 7.1 years ago by
Peter Langfelder
★ 3.0k • written 7.1 years ago by
hkarakurt
▴ 20
0
votes
0
replies
2.1k
views
How to interpret WGCNA's modulePreservation output when comparing 2 networks?
wgcna
modules
coexpression
networks
7.2 years ago
jol.espinoz
▴ 40
0
votes
0
replies
913
views
correlation between PCGs and the neighboring lncRNAs using LINC
coexpression
linc
LINC package
7.2 years ago
edoardobertolini
• 0
2
votes
1
reply
1.8k
views
How to know which soft threshold to use for blockwise modules in WGCNA?
wgcna
coexpression
transcriptome
updated 7.2 years ago by
Peter Langfelder
★ 3.0k • written 7.2 years ago by
jol.espinoz
▴ 40
1
vote
1
reply
1.7k
views
Setting soft threshold when comparing 2 networks in WGCNA?
wgcna
coexpression
cooccurrence
coabundance
network
updated 7.5 years ago by
Lluís Revilla Sancho
▴ 760 • written 7.6 years ago by
jol.espinoz
▴ 40
0
votes
2
replies
2.2k
views
Cutoff for coexpressed gene pairs using Pearson/Spearman correlation
microarray
pearsoncorrelation
coexpression
spearman
updated 8.2 years ago by
James W. MacDonald
68k • written 8.2 years ago by
juls
• 0
1
vote
0
replies
1.7k
views
Gene Set Testing or GSEA for functional annotation of co-expressed ncRNA and coding genes
gsea
ncrna
coexpression
gene set analysis
gene set testing
9.0 years ago
m.fletcher
▴ 20
3
votes
2
replies
2.9k
views
Finding nearest neighbors of given hub gene in a co-expression network module
wgcna
rbgl
graph
coexpression
hub genes
updated 9.1 years ago by
Peter Langfelder
★ 3.0k • written 9.1 years ago by
Alan Smith
▴ 150
2
votes
7
replies
5.3k
views
How to create "trait data" file for WGCNA
wgcna
coexpression
correlation
microarray
updated 9.2 years ago by
Peter Langfelder
★ 3.0k • written 9.2 years ago by
shalinisonar13
▴ 20
0
votes
1
reply
3.1k
views
WGCNA data format?
WGCNA
coexpression
microarray
updated 9.4 years ago by
Peter Langfelder
★ 3.0k • written 9.4 years ago by
michael.ridley6
• 0
13
votes
1
reply
5.5k
views
WGCNA - Compare module preservation between class
WGCNA
coexpression
updated 9.7 years ago by
Peter Langfelder
★ 3.0k • written 9.7 years ago by
abellonau
▴ 60
4
votes
5
replies
7.0k
views
WGCNA Tutorial Selection
wgcna
coexpression
updated 9.9 years ago by
Dan Tenenbaum
★ 8.2k • written 9.9 years ago by
ctruongctruong
▴ 10
18 results • Page
1 of 1
Recent ...
Replies
Comment: Module membership vs gene significance result and Modules-trait relationships re
by
Vinaya
• 0
Hi. I am having the same issue, and haven't found a solution still.
Comment: Feature Counts - potential bug with outfile.jcounts
by
Tom
• 0
[Penistone Locksmith][1] I think that would be a great idea; a novel junction to annotated junction proximity output column. So if the nove…
Comment: Filtering after DESeq
by
caroline.zanchi
• 0
I am going to try this right now, thanks !
Comment: Bioconductor 3.20 Release Schedule
by
randyprice13102000
• 0
This offers much info https://bioconductor.org/checkResults/release/bioc-LATEST/
Comment: Filtering after DESeq
by
ATpoint
★ 4.8k
The problem is that your prefilter is not group-aware so the behaviour of seeing these sorts of outliers is expected. This is why I always …
Votes
Answer: CluserProfiler message "No gene can be mapped"
A: Minfi issue: return code from pthread_create() is 22
Comment: Filtering after DESeq
Answer: DiffBind; Error: No sites have activity greater than filter value
DiffBind; Error: No sites have activity greater than filter value
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