Bioconductor Coexnet

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coexnet

updated 4.5 years ago by Kevin Blighe ★ 4.0k • written 4.5 years ago by web.surf.profile • 0

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bioconductor R coexnet

updated 6.2 years ago by shepherl 4.0k • written 6.2 years ago by gbahramali • 0

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Comment: EdgeR - Apparent Wrong Direction of logFC with Low Count Data by blmurphy • 0

Hi Gordon. It was collation with my edgeR results, BASTA taxonomy, and function gene annotation tables. Prior to doing this last check for …

Answer: Poor dispersion fit in DESeq2 by Michael Love 42k

The fit (red line) doesn't matter because you have so many samples. Note there is almost no shrinkage. Besides that you may be intereste…

Answer: DESeq2 analysis on 2 plant lines infected with virus, with 2 time points (days p by Michael Love 42k

I'd recommend actually meeting with a local statistician to work out the analysis plan, or someone familiar with linear models in R. I h…

Answer: DESeq2 design and contrasts with 2 drug-treated and one control group by Michael Love 42k

> Now I am interested in comparing the DE genes between the resistant and acute groups, but I am unsure how to account for DMSO in that com…

Answer: Spectra and PSMatch- trouble in reducePSMs, joinSpectraData, or countIdentificat by Laurent Gatto 1.6k

Tthis happens because the sequence spectraVariable is expected to be an atomic vector or a List with elements of length 1, but it's not - s…

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