Bioconductor Coercion

Showing : coercion • reset

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2.8k

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Rsubread featurecounts coercion

3.9 years ago • updated 3.8 years ago Konstantinos Yeles ▴ 80

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1.2k

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granges coercion

7.2 years ago Malcolm Cook ★ 1.6k

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genomicranges RaggedExperiment coercion logical factor

updated 7.4 years ago by Marcel Ramos 700 • written 7.5 years ago by Taran • 0

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s4 coercion iranges integerlist

8.7 years ago jian_liangli • 0

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2.1k

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coercion data manipulation s4vectors List

8.8 years ago Jurat Shahidin ▴ 80

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Answer: Unable to install a forged BSgenome package by James W. MacDonald 68k

Add a repos = NULL to `install.packages`. You may also need to either move the file to a dir that doesn't have a space in the name or you […

Comment: How to left_join a tidySummarizedExperiment with a GRanges object by seqnames an by James W. MacDonald 68k

Have you figured out how to do this using tidy grammar? Using non-tidy grammar is quite simple, and perhaps you already know how to do that…

Comment: How can I correctly use phyloseq with Docker? by James W. MacDonald 68k

You can use [bioc-run][1] to simplify things as well. [1]: https://github.com/Bioconductor/bioc-run/tree/devel

Comment: How can I correctly use phyloseq with Docker? by James W. MacDonald 68k

You show how you modified the container, but not how you are running it, which is the critical part.

Comment: Discrepancies in normalised count data vs unnormalised by AMgroup • 0

Thank you for your reply. > Per sample all counts are scaled by the same size factor so I strongly assume that something was parsed here …

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Answer: How to combine two DESeq2 objects (dds) for analysis

How to combine two DESeq2 objects (dds) for analysis

How can I correctly use phyloseq with Docker?

A: DESeq2::sizeFactors() function does not output the sizeFactor table.

Comment: Filtering after DESeq

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Popular Question to caroline.zanchi • 0