Showing : coefficient • reset
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DEseq2 coefficient
DESeq2 coefficient
14 months ago • updated 12 months ago JKim • 0
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3
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Clustering coefficient of synteny network
Network syntenet Clustering coefficient
22 months ago • updated 21 months ago Alexandros • 0
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Interpretation of coefficient when using "~ grp + grp:ind.n + grp:cnd"
DESeq2 interaction coefficient LinearModel RNASeq
updated 2.4 years ago by 43k • written 2.5 years ago by ▴ 10
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8
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DESeq2 coefficient names
resultsNames DESeq2 coefficient
4.0 years ago Jane ▴ 10
3
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1
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1.3k
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Interpretation of voom limma's intercept coefficient
limma voom intercept coefficient
updated 8.8 years ago by 68k • written 8.8 years ago by ▴ 110
5 results • Page 1 of 1
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Comment: Bioconductor 3.20 Release Schedule by randyprice13102000 • 0
This offers much info https://bioconductor.org/checkResults/release/bioc-LATEST/
Comment: Filtering after DESeq by ATpoint ★ 4.8k
The problem is that your prefilter is not group-aware so the behaviour of seeing these sorts of outliers is expected. This is why I always …
Comment: GSEA preranked analysis downstream of DEseq2 by ATpoint ★ 4.8k
All due respect, this is what people do since pvalues exist, so this paper is not a reference, not is this a special score that merits a na…
Comment: Check removeBatchEffect effectiveness by ATpoint ★ 4.8k
> insert size, mean GC, etc... This is not a classical "batch" in the common sense, at least I've never seen this to be corrected for expl…
Answer: Check removeBatchEffect effectiveness by Gordon Smyth 52k
Your call to removeBatchEffect() is not correct because that function does not have an argument called `batch3`, meaning that the batch fac…
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Answer: DiffBind; Error: No sites have activity greater than filter value
DiffBind; Error: No sites have activity greater than filter value
remove X and Y chromosome genes in RNA-seq data using DESeq2 pipeline
How to remove X & Y chromosome genes from RNAseq data
Is it advisable to remove X and Y chromosome genes in mouse bulk RNA-seq data at the level of the count matrix?
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