Bioconductor Coef

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lfcshrink coef DESeq2

updated 3.4 years ago by Michael Love 43k • written 4.4 years ago by Assa Yeroslaviz ★ 1.5k

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edger DGE coef

updated 7.5 years ago by Aaron Lun ★ 28k • written 7.5 years ago by rebeccajane93 • 0

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deseq2 lfc coef contrast

updated 7.7 years ago by Michael Love 43k • written 7.7 years ago by Anke Busch ▴ 10

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R reportingtools deseq2 pvalue coef

updated 8.8 years ago by Michael Love 43k • written 8.8 years ago by NMostajo ▴ 10

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Comment: [ChIP-seq] DESeq2 on counts matrix from union set of called peaks by Luca • 0

Sorry for reviving this 1 month later, but I was reading about size factor estimation, and just wanted to add my findings if anyone stumble…

Comment: DiffBind can't find a DAR by ATpoint ★ 4.8k

"My cake does not look as advertised in the recipe", with this sloppy sentence I hope you understand that you need to give people details, …

Comment: DESeq - help with pair wise comparisons by bd2000 ▴ 30

Follow up question, is this the correct way to extract results? ```r results <- results(ddsObj, list(c("GroupControl.Followup", "GroupTrea…

Comment: DESeq: Gene is not flagged as differentially expressed despite count data showin by ktz • 0

Thank you for your reply! I would love to know your thoughts on the plots I've included above. > 'Are the differences between groups lar…

Comment: DESeq: Gene is not flagged as differentially expressed despite count data showin by ktz • 0

I also realised that the other gene I pointed out that was flagged as DE but had similar count differences also shows that rep1 is lower th…

Votes

Comment: DESeq - help with pair wise comparisons

Answer: Is random access by row index possible for an indexed VCF file?

Answer: SingleR with multiple single cell references

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