Bioconductor Co-expression network

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WGCNA rnaseq gene expression co-expression network

updated 6.6 years ago by Peter Langfelder ★ 3.0k • written 6.6 years ago by davidjameswheatcroft ▴ 10

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wgcna picksoftthreshold scale-free topology co-expression network

6.6 years ago marcantoine.guery • 0

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LRT co-expression network deseq2 time course experiment network analysis

updated 18 months ago by Jennifer Dehner • 0 • written 6.7 years ago by aishu.jp ▴ 30

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WGCNA co-expression network RNA-Seq

6.7 years ago wangdp123 • 0

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WGCNA RNA-seq co-expression network module clustering

updated 7.8 years ago by Peter Langfelder ★ 3.0k • written 7.8 years ago by xie186 • 0

5 results • Page 1 of 1

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Comment: Struggle with the replicates of epic array data by Melisa Tecik • 0

Thanks you so much for the instructions. I also tried M values as you suggested but sadly the result was the same. Apparently, the problem …

Answer: bioconductor packages on bioconda by James W. MacDonald 67k

The bioconda people are responsible for bioconda, so you should ask them if/when they are going to update.

Answer: txdb.mmusculus.ucsc.mm10.knowngene issue on X chromosome by James W. MacDonald 67k

The default for `plotKaryotype` is to use hg19.

Comment: Is it possible to parallelise saveHDF5SummarizedExperiment by Stefano Mangiola ▴ 20

saveTileDBSummarizedExperiment would be awesome. I think we need performance for execution time and memory required to save.

Comment: Create Illmina bead summary data by Liu • 0

Hi! Yes, thank you! I completely agree. I am just curious about how these two files are processed with AVG_Gre and detection p-value. I am …

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Answer: Struggle with the replicates of epic array data

Answer: bioconductor packages on bioconda

Appropriate use of the function treat of the limma package

Comment: Is it recommended to analyze different tissues together when using edgeR

Answer: Deseq2 res Function

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Scholar to James W. MacDonald 67k