Bioconductor Cnvtools

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genomicranges cnvtools

7.1 years ago julrodr80 ▴ 30

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cnv cnvtools crlmm

8.3 years ago enriquev • 0

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copynumber cnvtools cnv copywriteR

updated 8.3 years ago by t.kuilman ▴ 170 • written 8.3 years ago by ahinsahr11 • 0

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cn.mops cnvtools tcga cnv

updated 9.0 years ago by Günter Klambauer ▴ 540 • written 9.0 years ago by vakul.mohanty ▴ 20

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cn.mops cnv cnvtools

updated 9.3 years ago by Günter Klambauer ▴ 540 • written 9.3 years ago by voksdvoks • 0

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cn.mops cnv cnvtools

updated 9.3 years ago by Martin Morgan 25k • written 9.3 years ago by bioconductor • 0

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CNVtools CNVtools

updated 14.8 years ago by Sean Davis 21k • written 14.8 years ago by Bryan Hepworth ▴ 30

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953

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CNVtools CNVtools

15.0 years ago Vincent Plagnol ▴ 10

8 results • Page 1 of 1

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Comment: Differential Expression Analysis with unbalanced batches without replication bet by Thili • 0

Thank you for your reply. I currently have batch-corrected data processed with scvi-tools (specifically, totalvi) and have followed the sam…

Comment: Problem at champ.load by andrew.gibbons • 0

I'd love to know if anyone has a workaround too. I've tried rolling back ChAMP and R to the previous versions that others have said work wi…

Comment: GOstats kegg analysis in wheat - help - none of the objects in the first column by GV Yoshikawa • 0

Thank you for the reply. I tried swapping columns before asking, it made no difference. head(keggframeData) path_id kegg…

Answer: Differential Expression Analysis with unbalanced batches without replication bet by Gordon Smyth 51k

> Is there an alternative model or approach in tools like edgeR, limma-voom, or DESeq2 or any other that can handle confounded batch effect…

Comment: BiomaRt Possible Ensembl SSL connectivity problems detected. by Adam • 0

I just found this workaround: httr::set_config(config(ssl_verifypeer = FALSE, ssl_verifyhost = FALSE)) at [this Stack Overflow link][…

Votes

A: Up/Down Regulated GeneList from edgeR and R

A: Down/Up-regulated genes asymmetry in edgeR differential expression analysis

Answer: Combining RNAseq and microarray data using edgeR/limma-voom

Answer: How do I merge a list of GRanges?

Awards • All

Teacher to Gordon Smyth 51k

Popular Question to Guido Hooiveld ★ 4.1k