Bioconductor Cnvtools

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genomicranges cnvtools

7.3 years ago julrodr80 ▴ 30

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cnv cnvtools crlmm

8.6 years ago enriquev • 0

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copynumber cnvtools cnv copywriteR

updated 8.6 years ago by t.kuilman ▴ 170 • written 8.6 years ago by ahinsahr11 • 0

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cn.mops cnvtools tcga cnv

updated 9.3 years ago by Günter Klambauer ▴ 540 • written 9.3 years ago by vakul.mohanty ▴ 20

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cn.mops cnv cnvtools

updated 9.6 years ago by Günter Klambauer ▴ 540 • written 9.6 years ago by voksdvoks • 0

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cn.mops cnv cnvtools

updated 9.6 years ago by Martin Morgan 25k • written 9.6 years ago by bioconductor • 0

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CNVtools CNVtools

updated 15.0 years ago by Sean Davis 21k • written 15.0 years ago by Bryan Hepworth ▴ 30

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993

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CNVtools CNVtools

15.3 years ago Vincent Plagnol ▴ 10

8 results • Page 1 of 1

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Comment: DESeq2 It is correct to use interaction term for patient variability? by Bradley • 0

I apologize, but I am still perplexed. I need to know the exact type of replication. Do we have many samples taken from the same tumor? You…

Comment: Differential variance analysis - can i use deseq2 by Michael Love 43k

VST is valid for working with expression data on a variance stabilized scale, so yes. There are many papers that have used VST and then com…

Answer: Use of limma R package with targeted proteomics for DE analysis by Gordon Smyth 52k

It is usual to analyse log normalized values from Olink in limma. Just a straight log transformation should be sufficient. We find that `tr…

Comment: WGCNA by pammelala304 • 0

Thank you for your time and effort. I am so grateful! Play game [block blast](https://blockblastpuzzle.io) free.

Comment: Does anyone have the command to download all of the core_nt using blast_db_get() by Matthew Thornton ▴ 380

Ok. So I guess the core_nt is over 300Gb compressed. I can do it, but maybe it is better to just use ncbi-tools over the internet and just…

Votes

Comment: Different annotation packages (org.Mm.eg.db, EnsDb.Mmusculus.v79, BiomaRt) retu

Answer: normalizatino of dna methylation EPIC data

Answer: Differential expression of protein coding ENSGs (Ensembl IDs) | When to biomaRt?

Suggesting changing the "reply-to" field to the mailing list address.

Answer: UniProt.ws query for single UniRef90 ID takes several minutes

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