Bioconductor Cnvtools

Showing : cnvtools • reset

votes

replies

1.1k

views

genomicranges cnvtools

7.3 years ago julrodr80 ▴ 30

votes

replies

1.4k

views

cnv cnvtools crlmm

8.5 years ago enriquev • 0

votes

1.9k

views

copynumber cnvtools cnv copywriteR

updated 8.5 years ago by t.kuilman ▴ 170 • written 8.5 years ago by ahinsahr11 • 0

votes

replies

2.2k

views

cn.mops cnvtools tcga cnv

updated 9.2 years ago by Günter Klambauer ▴ 540 • written 9.2 years ago by vakul.mohanty ▴ 20

votes

replies

2.0k

views

cn.mops cnv cnvtools

updated 9.5 years ago by Günter Klambauer ▴ 540 • written 9.5 years ago by voksdvoks • 0

votes

replies

2.7k

views

cn.mops cnv cnvtools

updated 9.5 years ago by Martin Morgan 25k • written 9.5 years ago by bioconductor • 0

votes

1.0k

views

CNVtools CNVtools

updated 15.0 years ago by Sean Davis 21k • written 15.0 years ago by Bryan Hepworth ▴ 30

votes

replies

982

views

CNVtools CNVtools

15.2 years ago Vincent Plagnol ▴ 10

8 results • Page 1 of 1

Recent ...

Replies

Comment: How to sort negative log2FC or FC in RNAseq for GSEA? by Quang NN ▴ 10

Thank you so much for taking time to provide this clarification!

Comment: How can I generate a heatmap and clustering of differentially expressed genes in by Renuka • 0

Thanks Kelvin i had same doubt .Do i need to do log2 (FPKMcounts) for this

Comment: Is there a way to do DEG analysis across two batches sharing one sample only? by georgeyu703 • 0

Michael, Thank you very much!

Comment: Is there a way to do DEG analysis across two batches sharing one sample only? by Michael Love 43k

Yes, with the knowledge that, it is expected to be underpowered.

Comment: Is there a way to do DEG analysis across two batches sharing one sample only? by georgeyu703 • 0

Thank you, Michael. How? Could you provide more details? Can I just do it as usual, I mean to include batch in the model?

Votes

Answer: SingleCellExperiment convenience function for metadata+expression?

How to correct for tumor purity using DESeq2 to analyze TCGA tumor sample expression.

Answer: EdgeR Biological CVs

Answer: Error in download.file for TCGAutils::symbolsToRanges

Awards • All