Showing : classification • reset
1
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598
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BiocNeighbours Utility for k-Nearest Neighbour Classification
Classification BiocNeighbors
updated 5 months ago by 68k • written 5 months ago by ★ 1.6k
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0
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988
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Job: Two Bioinformatics Fellowship Positions at US EPA
bioinformatics toxicology Job sequenicng statistics
4.8 years ago • updated 4.5 years ago whduke • 0
3
votes
2
replies
1.4k
views
Using deseq2 with batch effects and classification as downstream analysis
deseq2 batch effect classification
updated 6.5 years ago by 43k • written 6.6 years ago by • 0
1
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5
replies
1.5k
views
CRImage createTrainingSet package is not available to install
classification segmentation cell types image analysis crimage
6.7 years ago Jenny.chien • 0
0
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0
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1.0k
views
NMF pre-processsing effect on classification
NMF log2 classification bioconductor
6.9 years ago Seymoo • 0
0
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1
reply
1.3k
views
Classification with large number of qualitative variables
R classification qualitative variables high dimensionnal
updated 8.4 years ago by ▴ 130 • written 8.4 years ago by • 0
0
votes
0
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1.2k
views
Help in interpreting the plot of the function plotRLDF in limma package for microarray dataset concerning two categorical classes
limma plotRLDF microarray classification linear discriminant function
8.9 years ago svlachavas ▴ 840
0
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1
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1.3k
views
Questions about the correct implementation of the function plotRLDF from R package limma regarding classification of a microarray dataset
limma microarray plotRLDF classification
8.9 years ago svlachavas ▴ 840
0
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0
replies
905
views
Package for classifying two classes of sequences using hidden markov models?
hmm classification
9.1 years ago vinod.acear ▴ 50
1
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1
reply
2.6k
views
edgeR GLM fitted values
edgeR GLM classification rnaseq
updated 9.2 years ago by ★ 28k • written 9.2 years ago by ▴ 10
1
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2
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1.9k
views
Possible methodologies of machine learning in R that can assimilate continuous variables along gene expression data for microarray classification
classification machinelearning microarray multivariate caret
updated 9.5 years ago by ★ 13k • written 9.5 years ago by ▴ 840
0
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0
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1.6k
views
Error in R package "cancerclass" with function nvalidate
cancerclass bioconductor machinelearning classification
10.0 years ago svlachavas ▴ 840
0
votes
2
replies
1.4k
views
Ranked genes generated by learning datasets and Differentially expressed genes generated by original data
Classification Classification
updated 10.8 years ago by 21k • written 10.8 years ago by ★ 13k
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3
replies
1.8k
views
Suitable learning sets, gene selection methods and classification methods for low replicated microarray samples
Classification CMA Classification CMA
updated 10.8 years ago by 21k • written 10.8 years ago by ★ 13k
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0
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1.2k
views
Course "CSAMA 2014" Computational Statistics for Genome Biology
Annotation Classification Clustering Annotation Classification Clustering
11.0 years ago Wolfgang Huber ★ 13k
0
votes
3
replies
1.8k
views
MLSeq Mathematical Concepts
Classification edgeR DESeq MLSeq Classification edgeR DESeq MLSeq
updated 11.0 years ago by ★ 13k • written 11.0 years ago by ★ 1.6k
0
votes
1
reply
1.8k
views
Support vector regression
Classification Regression Classification Regression
updated 11.1 years ago by ★ 13k • written 11.1 years ago by ★ 13k
0
votes
0
replies
1.3k
views
CSAMA 2014: Computational Statistics for Genome Biology - June 22-27, 2014
Sequencing Annotation Classification Clustering Sequencing Annotation Classification
11.2 years ago Wolfgang Huber ★ 13k
0
votes
0
replies
1.6k
views
CfP: CAMDA 2013 - 12th International Conference on Critical Assessment of Massive Data Analysis
Genetics Classification Regression Genetics Classification Regression
12.0 years ago CAMDA 2013 ▴ 30
0
votes
0
replies
1.3k
views
CAMDA 2013 Challenge: Big Data in Life Sciences
Sequencing Microarray Genetics Classification Clustering Regression Sequencing Microarray
12.1 years ago CAMDA 2013 ▴ 30
0
votes
5
replies
3.6k
views
DESeq2
Normalization Classification Clustering DESeq cqn DESeq2 Normalization Classification cqn
updated 12.1 years ago by 43k • written 12.1 years ago by ★ 13k
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0
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2.4k
views
Bioconductor Digest, Vol 121, Issue 13
RNASeq Microarray Normalization GO Classification Clustering Cancer Mus musculus probe GO
12.1 years ago Matthew Thornton ▴ 380
0
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3
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3.3k
views
Subsetting expression sets for mass spec data - second ask
Classification Cancer PROcess Classification Cancer PROcess
updated 12.4 years ago by 21k • written 12.4 years ago by ▴ 300
0
votes
3
replies
3.2k
views
PAMR- Package: Workflow and/or other methods
Classification Classification
updated 12.5 years ago by 21k • written 12.5 years ago by ▴ 70
0
votes
0
replies
1.7k
views
Classification in Mass Spectrometry Data
Microarray Classification Cancer Ovarian PROcess MLInterfaces ASSIGN Microarray Cancer
12.5 years ago McGee, Monnie ▴ 300
0
votes
0
replies
1.1k
views
Questions regarding MCRestimate package
Classification MCRestimate Classification MCRestimate
12.8 years ago Guest User ★ 13k
0
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0
replies
1.6k
views
Overlapping ROC plots
Classification ROC graph Classification ROC graph
12.9 years ago Yadav Sapkota ▴ 130
0
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0
replies
867
views
Question about MCRestimate
Classification Classification
12.9 years ago ZHENG FU ▴ 10
0
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5
replies
4.9k
views
probability of a point membership to a certain cluster
Classification Classification
updated 13.3 years ago by ★ 13k • written 13.3 years ago by ▴ 60
0
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0
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2.8k
views
'Empty model' error during Monte Carlo cross-validation of SVM classification with the CMA package
Microarray Classification limma CMA Microarray Classification limma CMA
14.2 years ago Santosh Patnaik ▴ 30
0
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4
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1.9k
views
RandomForest, supervised machine learning and uncertainty
GO Classification GO Classification
updated 14.4 years ago by 6.7k • written 14.4 years ago by ▴ 370
0
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0
replies
1.1k
views
Fwd: question regarding to MLInterface
Network Classification Network Classification
14.5 years ago Vincent J. Carey, Jr. 6.7k
0
votes
0
replies
19k
views
1000 R tutorials/Links
Sequencing Microarray Genetics Visualization Network Bayesian Classification Clustering
14.9 years ago David Lyon ▴ 340
0
votes
0
replies
1.6k
views
R Course 28-29 March in Heidelberg (EMBL)
Classification Classification
15.2 years ago Wolfgang Huber ★ 13k
0
votes
3
replies
1.2k
views
HTqPCR and limma and factorial design with no replicates
Microarray qPCR Classification limma HTqPCR ASSIGN Microarray qPCR Classification limma
updated 15.3 years ago by ★ 6.0k • written 15.3 years ago by ▴ 810
0
votes
1
reply
1.8k
views
Seeking assistance on ROC
Microarray GO Classification ROC graph ASSIGN Microarray GO Classification ROC graph
updated 15.3 years ago by ★ 13k • written 15.3 years ago by 21k
0
votes
1
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1.3k
views
HTqPCR and limma and factorial design with no replicates
Microarray qPCR Classification limma HTqPCR ASSIGN Microarray qPCR Classification limma
updated 15.3 years ago by ★ 6.0k • written 15.3 years ago by ▴ 810
0
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0
replies
1.4k
views
compare function in CMA package
Classification CMA Classification CMA
15.3 years ago Javier Pérez Florido ▴ 840
0
votes
0
replies
1.4k
views
Statistical approach to compare differentiall expressed gene lists
Microarray Classification Microarray Classification
15.4 years ago qinghua xu ▴ 110
0
votes
0
replies
1.2k
views
回复： 回复： : Patent issues of classification algorithms
Microarray Classification Microarray Classification
15.4 years ago qinghua xu ▴ 110
0
votes
0
replies
885
views
转发： 回复： Patent issues of classification algorithms
Microarray Classification Cancer Microarray Classification Cancer
15.4 years ago Martin Morgan 25k
0
votes
1
reply
1.4k
views
Sample size estimation for independent validation set
Microarray Classification PROcess Microarray Classification PROcess
updated 15.4 years ago by ▴ 110 • written 15.4 years ago by ▴ 10
0
votes
1
reply
1.3k
views
classification method applied to microarrays (CMA package)
Classification CMA Classification CMA
updated 15.5 years ago by ▴ 10 • written 15.5 years ago by ▴ 190
0
votes
0
replies
1.5k
views
Post-doc bio-informatics in next generation sequencing (36 h) (VUMC - The Netherlands)
Sequencing Genetics Classification Cancer PROcess Sequencing Genetics Classification
15.5 years ago Reek, J. ▴ 10
0
votes
2
replies
1.3k
views
OT: van 't Veer (2002) classifier
Classification Cancer Breast Classification Cancer Breast
updated 15.7 years ago by ★ 1.3k • written 15.7 years ago by ▴ 110
0
votes
0
replies
1.7k
views
CMA package: variable selection with limma
Microarray Classification Regression limma CMA Microarray Classification Regression limma
16.2 years ago Renaud Gaujoux ▴ 170
0
votes
0
replies
1.7k
views
Correcting for covariate (very unbalanced design)
Microarray Classification limma Microarray Classification limma
16.5 years ago Renaud Gaujoux ▴ 170
0
votes
3
replies
1.9k
views
Bioconductor 2.3 is released
aCGH Sequencing miRNA Microarray Visualization Bayesian Classification Survival Yeast LPE
16.5 years ago Patrick Aboyoun ★ 1.6k
0
votes
3
replies
1.3k
views
Generating random gene lists: does sample/resample generate random sets
Classification Classification
16.6 years ago Scott Ochsner ▴ 300
0
votes
2
replies
2.0k
views
Generating random gene lists: does sample/resample generate random sets
Classification Classification
updated 16.6 years ago by ▴ 750 • written 16.6 years ago by ▴ 300
50 results • Page 1 of 1
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Comment: How can I correctly use phyloseq with Docker? by James W. MacDonald 68k
You can use [bioc-run][1] to simplify things as well. [1]: https://github.com/Bioconductor/bioc-run/tree/devel
Comment: How can I correctly use phyloseq with Docker? by James W. MacDonald 68k
You show how you modified the container, but not how you are running it, which is the critical part.
Comment: Discrepancies in normalised count data vs unnormalised by AMgroup • 0
Thank you for your reply. > Per sample all counts are scaled by the same size factor so I strongly assume that something was parsed here …
Comment: Discrepancies in normalised count data vs unnormalised by ATpoint ★ 4.8k
Please show examples using `plotCounts()`. Custom spreadsheets harbor the risk of parsing errors along the way which very often explains wh…
Comment: Cannot extract size factor from DESeq2 analysis by s.malik • 0
Dear Mike, using tximeta and following code, is this fine to extract normalized counts after `sizeFactors(dds)` gives NULL? `dds <- DESeq…
Votes
Answer: How to combine two DESeq2 objects (dds) for analysis
How to combine two DESeq2 objects (dds) for analysis
How can I correctly use phyloseq with Docker?
A: DESeq2::sizeFactors() function does not output the sizeFactor table.
Comment: Filtering after DESeq
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