Bioconductor Cibersort

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cibersort deconvR immune

updated 11 months ago by ivorychan7777 • 0 • written 2.1 years ago by 609b0d25 • 0

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normalization r vst cibersort

updated 4.6 years ago by Kevin Blighe ★ 4.0k • written 4.6 years ago by Matan G. ▴ 60

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Answer: Clarification on GOALL / GO2ALLORFs mapping by James W. MacDonald 68k

It appears that 'negative regulation of glycogen biosynthesis' has an 'is a' relationship with 'glycogen biosynthetic process' https://www.…

Comment: Can't post a question? by DavideSant • 0

Thank you, this was super useful!

Comment: Error in retrieving clinical data by silickas • 0

Thank you for the reply. I will try to do that next time. This time instead, I used the GenomicDataCommons package to download clinical dat…

Comment: deseq2 lfc shrinkage with few DEGs by Robert • 0

I'm dealing with a similar situation. I assume the coefficients related to batch effect would need to be included in idx also, is this corr…

Comment: [ChIP-seq] DESeq2 on counts matrix from union set of called peaks by Luca • 0

Thank you so much!! Yeah I had thought about this too, regarding the fact that DiffBind is a wrapper for counting peaks in this way in R di…

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