Bioconductor Chipqcreport

Showing : chipqcreport • reset

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ChipQCReport

updated 24 months ago by Okan • 0 • written 2.2 years ago by stacy.genovese • 0

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chipqc chipqcreport

6.4 years ago molly_the_minotaur ▴ 30

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ChipQC chipqcreport

6.5 years ago tapio.envall • 0

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chipqc chipqcreport

7.4 years ago jared.andrews07 ▴ 30

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chipqc chipqcreport

updated 7.6 years ago by Thomas Carroll ▴ 420 • written 7.6 years ago by Roger • 0

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chipqc diffbind chipqcreport

updated 7.6 years ago by Thomas Carroll ▴ 420 • written 7.6 years ago by Coby Viner ▴ 50

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ChIPQC ChIPQCreport

updated 7.7 years ago by Thomas Carroll ▴ 420 • written 7.7 years ago by ZheFrench ▴ 60

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1.5k

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ChIPQC ChIPQCreport

updated 7.7 years ago by Thomas Carroll ▴ 420 • written 7.7 years ago by ZheFrench ▴ 60

8 results • Page 1 of 1

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Answer: Selection of correct coefficients or contrasts in DESeq2 by James W. MacDonald 67k

Using R's model formulation for three-way interactions is probably not the way to go here. Or at least I wouldn't do it that way. An easier…

Comment: How to generate circular cnetplot and color nodes and edges in the same plot ? by Blandine • 0

Thank you so much ! It's working !

Comment: how should I apply "cpg.annotate" to TCGA methylation data in hg38 for HM450K? by James W. MacDonald 67k

Yes. If you have the Illumina IDs, then all the annotation data that `cpg.annotate` uses will be based on hg19. It doesn't matter if TCGA l…

Comment: Recount3 data correspond to TCGA data by Leonardo Collado Torres ★ 1.1k

Thanks @fep29! ^^

Comment: how should I apply "cpg.annotate" to TCGA methylation data in hg38 for HM450K? by Prakash Sah • 0

I am in a similar situation. So, I have a matrix of beta values with row names as probe ids (which are annotated to hg38 as it is from harm…

Votes

Comment: Recount3 data correspond to TCGA data

Answer: DESeq2- merging technical vs biological replicates

Answer: SingleCellExperiment convenience function for metadata+expression?

How to correct for tumor purity using DESeq2 to analyze TCGA tumor sample expression.

Answer: EdgeR Biological CVs

Awards • All

Popular Question to Robert Castelo ★ 3.4k

Popular Question to Robert Ivanek ▴ 750