Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
Showing :
chipqc
•
reset
0
votes
1
reply
200
views
Unevaluated error in ChIPQC combined with BiocParallel
BiocParallel
ChIPQC
written 11 weeks ago by
Young Boqin
• 0
2
votes
1
reply
1.9k
views
DiffBind: Error in if (res$config$bCorPlot) { : the condition has length > 1
DiffBind
ChIPQC
updated 2.3 years ago by
Rory Stark
★ 5.2k • written 2.3 years ago by
ryleehackley
• 0
4
votes
13
replies
4.6k
views
BiocParallel error with ChIPQC
BiocManager
ChIPQC
RSamtools
BiocParallel
updated 23 months ago by
Rory Stark
★ 5.2k • written 2.5 years ago by
etiennedanis
• 0
0
votes
7
replies
2.3k
views
CHIPQC error regarding BiocParallel
CHIPQC
Diffbind
chipseq
rory stark
Thomas Carroll
updated 2.4 years ago by
arisarkar88
▴ 40 • written 4.7 years ago by
bioinfouser2
▴ 10
1
vote
2
replies
1.2k
views
Could it be possible to get an older version of ChIPQC?
ChIPQC
ChIP-seq
DiffBind
Rory_Stark
2.4 years ago
etiennedanis
• 0
0
votes
3
replies
1.1k
views
ChIPQC: Depths of coverage plot - Figure 1 of the ChIPQC report
ChIPQC
written 3.4 years ago by
etiennedanis
• 0
0
votes
1
reply
1.2k
views
saving png images and X11
ChipQC
updated 2.8 years ago by
ATpoint
★ 4.6k • written 2.8 years ago by
Bogdan
▴ 670
0
votes
0
replies
988
views
Generate a custom annotation for ChIPQC
ChIPQC
updated 2.8 years ago by
James W. MacDonald
67k • written 2.8 years ago by
channie1001
• 0
0
votes
2
replies
1.1k
views
ChIP-seq or CUT&RUN enrichment
ChIPQC
ChIPpeakAnno
2.9 years ago
Bogdan
▴ 670
3
votes
6
replies
15k
views
Error: Faceting variables must have at least one value when plotting with ChIPQC
ChipQC
chipqc
updated 2.2 years ago by
Xue
• 0 • written 8.3 years ago by
thekatybrown
▴ 10
0
votes
0
replies
657
views
ChIPQC: Theme
ChIPQC
3.4 years ago
etiennedanis
• 0
1
vote
2
replies
993
views
ChIPQC: log2 or log10?
ChIPQC
3.4 years ago
etiennedanis
• 0
3
votes
1
reply
1.2k
views
ChIPQC 'Contigs of interest are not all in Bam file!!' error
ChIPQC
3.6 years ago
Jonah
▴ 20
0
votes
2
replies
1.4k
views
ChIPQC error in previously working code (BAM association error)
chipqc
updated 2.1 years ago by
stacy.genovese
• 0 • written 3.7 years ago by
Coby Viner
▴ 50
2
votes
3
replies
2.1k
views
ChipQC 'names' attribute [9] must be the same length as the vector [2]'
chipqc
updated 7 months ago by
bandconductor
• 0 • written 4.2 years ago by
ZheFrench
▴ 60
2
votes
7
replies
2.3k
views
How to generate custom annotation for rat genome rn6 in ChIPQC
ChIPQC
annotation
rn6
updated 12 months ago by
Raghavaram
• 0 • written 4.3 years ago by
Frédéric Crémazy
• 0
0
votes
2
replies
1.6k
views
Error while running ChIPQC
ChIPQC
updated 4.1 years ago by
Kevin Blighe
★ 4.0k • written 4.1 years ago by
zebasilio
• 0
1
vote
3
replies
3.2k
views
Downsampling ChIP-seq BAM files with spike in normalization factor before feeding into Diffbind
diffbind
chipseq
chipqc
updated 4.1 years ago by
Rory Stark
★ 5.2k • written 6.8 years ago by
bioinfouser2
▴ 10
0
votes
0
replies
1.4k
views
ChIPQC BiocParallel problems and how to select the "PeakCaller" for broad histone modification
ChIPQC
4.2 years ago
lida
• 0
0
votes
0
replies
874
views
ChIPQC cross-coverage plot
chipqc
chip-seq
4.7 years ago
tuteja.reetu
• 0
0
votes
0
replies
756
views
Missing some plots and columns in my ChIPQC report
ChIPQC
BioConductor
4.8 years ago
mudithekanayake
• 0
0
votes
1
reply
930
views
ChIPQC produces empty cross correlation plot
chipqc
cross correlation
4.9 years ago
nikhil.ashok.joshi
• 0
0
votes
1
reply
1.1k
views
ChIPQC: Error in summary.factor
ChIPQC
updated 5.1 years ago by
bl.lagerwaard
• 0 • written 5.2 years ago by
mahmoud.fassad.14
• 0
0
votes
0
replies
871
views
ChIPQC makes a neverending loop while using all chromosomes
chipqc
chipseq
ChIPQC
5.3 years ago
laura.mannarino
▴ 20
1
vote
1
reply
1.3k
views
ChIPQC: issues with report generation and QC metrics
ChIPQC
software error
5.3 years ago
ryleehackley
• 0
2
votes
2
replies
1.6k
views
ChIPQC gives Bam file has 297 contigs Error: subscript contains out-of-bounds indices
ChIP-seq
ChIPQC
QC
updated 5.4 years ago by
zhenfeng.liu1
▴ 20 • written 5.8 years ago by
star
▴ 10
3
votes
6
replies
2.1k
views
Integer overflow issue with ChIPQC
ChIPQC
Rstudio
updated 5.5 years ago by
Martin Morgan
25k • written 5.5 years ago by
Nitesh Kumar Singh
▴ 30
0
votes
1
reply
1.6k
views
ChIPQC BiocParallel errors
ChIPQC
ChIPQC error
BiocParallel
5.5 years ago
minervajunjun
• 0
2
votes
4
replies
3.4k
views
ChIPQC error: "names' attribute [9] must be the same length as the vector [7]"
ChIPQC
updated 3.4 years ago by
Yue
• 0 • written 5.5 years ago by
analeigh.gui
▴ 20
0
votes
1
reply
1.3k
views
Unable to annotate in ChIPQC using yeast genome
ChIPQC
GenomicRanges
ChIPpeakAnno
updated 3.6 years ago by
Zender
• 0 • written 5.6 years ago by
bertb
• 0
0
votes
1
reply
998
views
ChIPQC error: NCList object is too deep
ChIPQC
updated 5.9 years ago by
Thomas Carroll
▴ 420 • written 5.9 years ago by
nikhil.ashok.joshi
• 0
0
votes
4
replies
2.1k
views
ATAC-Seq peaks quality control with ChIPQC package, but getting error
ATAC-Seq
ChIPQC
updated 5.9 years ago by
James W. MacDonald
67k • written 5.9 years ago by
Subinoy Biswas
▴ 10
0
votes
6
replies
1.7k
views
ChiPQC: 1Error in 1:(2 * readlength(object)) : NA/NaN argument
ChiPQC
updated 5.9 years ago by
Martin Morgan
25k • written 5.9 years ago by
zebasilio
• 0
0
votes
3
replies
1.5k
views
ChIPQC ERROR with "subscript out of bounds"
chipqc
6.0 years ago
Chevy Xu
• 0
2
votes
6
replies
2.5k
views
ChIPQC: error during annotation compilation
ChIPQC
updated 6.3 years ago by
Thomas Carroll
▴ 420 • written 6.3 years ago by
hdingwall
▴ 10
3
votes
5
replies
2.9k
views
ChIPQC - can't read in bam files
chipqc
chipqcreport
6.3 years ago
molly_the_minotaur
▴ 30
0
votes
0
replies
916
views
ChIPQC Error in names(res) <- nms
chipqc
6.3 years ago
gavrielmatt
▴ 30
1
vote
7
replies
3.2k
views
ChipQC not loading files
ChipQC
diffbind
updated 6.4 years ago by
Thomas Carroll
▴ 420 • written 6.4 years ago by
annap
• 0
0
votes
2
replies
1.2k
views
ChipQCreport coverage plot failure?
ChipQC
chipqcreport
6.4 years ago
tapio.envall
• 0
0
votes
4
replies
2.5k
views
ChIPQC error: "non-zero exit status"
software error
package installation
chipqc
txdb.hsapiens.ucsc.hg18.knowngene
updated 6.4 years ago by
Martin Morgan
25k • written 6.4 years ago by
hallie.s
• 0
0
votes
0
replies
1.3k
views
ChIPQC : ChIPQCreport : Error: Dimensions exceed 50 inches when saving plot with large sampleSheet
chipqc
6.8 years ago
ZheFrench
▴ 60
0
votes
0
replies
1.2k
views
ChIPQC 0 unmapped does not agree with the samtool generated stats
ChIPQC
7.0 years ago
ew152
• 0
0
votes
0
replies
1.3k
views
ChIPQC: Error in names(res) <- nms
ChIPQC
chip-seq
7.1 years ago
nbkingsley
• 0
5
votes
11
replies
2.4k
views
ChIPQC Error in .Call2 NCList object is too deep
ChIPQC
updated 7.1 years ago by
Thomas Carroll
▴ 420 • written 7.1 years ago by
Victor Goitea
▴ 10
0
votes
1
reply
1.7k
views
Can ChIPQC analyze mandarin duck ChIP-Seq data?
ChIPQC
updated 7.2 years ago by
Thomas Carroll
▴ 420 • written 7.3 years ago by
Gary
▴ 20
0
votes
4
replies
1.9k
views
Unhelpful Errors Running ChIPQC on Computing Cluster
chipqc
chipqcreport
7.3 years ago
jared.andrews07
▴ 30
0
votes
0
replies
999
views
ChIPQC stops at chr3 for calculating shift
chipqc
7.3 years ago
psudyant
• 0
2
votes
5
replies
2.1k
views
Diffbind: dba.plot retrieve variance explained
diffbind
chipqc
updated 7.3 years ago by
Rory Stark
★ 5.2k • written 7.3 years ago by
ZheFrench
▴ 60
3
votes
12
replies
4.2k
views
ChIPQC failling when run ChIPQC() over 6 samples
chipqc
updated 7.3 years ago by
Thomas Carroll
▴ 420 • written 9.8 years ago by
atisou
• 0
0
votes
3
replies
1.5k
views
ChiPQC run time error
ChiPQC
updated 7.4 years ago by
Thomas Carroll
▴ 420 • written 7.4 years ago by
NANADAWONG
• 0
50 results • Page
1 of 1
Recent ...
Replies
Comment: Cross-validation with multiple control subgroups in limma
by
Ali Barry
▴ 40
Thanks so much for taking the time here, the insights are much appreciated. I suspected I'd have to ad hoc compare results if I did repeat …
Answer: Cross-validation with multiple control subgroups in limma
by
Gordon Smyth
52k
limma doesn't do cross-validation or resampling. Like most classical linear modeling procedures in statistics, limma uses a statistical mod…
Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio
by
Robert Castelo
★ 3.4k
Hi Hervé, thank you very much for your input into how to properly build and manage TxDb objects. gDNAx has two main inputs, one or more BAM…
Comment: Biostrings: Error writing long reads (>200 kbps) with writeQualityScaledXStringS
by
Aidan
▴ 60
Quick update: this is fixed in a branch awaiting PR to Biostrings (https://github.com/Bioconductor/Biostrings/pull/122). Should be in `deve…
Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings?
by
Michael Love
43k
For statistical analysis plans, I recommend working with a local statistician or someone familiar with linear models in R. I have to reserv…
Votes
Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio
C: edgeR and lack of counts ID on CPM matrix
A: DESeq2 Following RSEM
A: importing RSEM data into DESeq2
A: Expected counts from RSEM in DESeq2
Awards
• All
Popular Question
to
Ali Barry
▴ 40
Popular Question
to
gabriel.hoffman
▴ 170
Popular Question
to
Jenny Drnevich
★ 2.0k
Popular Question
to
martin.grigorov
▴ 10
Scholar
to
James W. MacDonald
67k
Locations
• All
St Louis, MO,
48 minutes ago
UPF, Barcelona, Spain,
57 minutes ago
The city by the bay,
1 hour ago
WEHI, Melbourne, Australia,
1 hour ago
Germany,
1 hour ago
Traffic: 527 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6