Showing : chipname • reset
0
votes
2
replies
2.2k
views
Beadarray import of iScan generated Illumina gene expression data
Microarray GO ChipName beadarray Microarray GO ChipName beadarray
updated 9.0 years ago by • 0 • written 13.2 years ago by ▴ 350
0
votes
2
replies
1.0k
views
problem with creating array annotation package
Microarray Annotation ChipName Microarray Annotation ChipName
updated 11.4 years ago by ★ 3.9k • written 11.4 years ago by ★ 4.1k
0
votes
0
replies
2.5k
views
8. CGHCall problems (Bernard North [guest]) : Bioconductor Digest, Vol 126, Issue 7
aCGH RNASeq ChIPSeq Proteomics Annotation Normalization GO Network Cancer ChipName probe
11.4 years ago Sarah JugurnauthLittle ▴ 20
0
votes
1
reply
1.3k
views
答复: an error in AnnotationForge
Annotation ChipName annotate affy AnnotationForge Annotation ChipName annotate affy
11.5 years ago joseph ▴ 50
0
votes
1
reply
1.2k
views
an error in AnnotationForge
Annotation ChipName annotate affy AnnotationForge Annotation ChipName annotate affy
updated 11.5 years ago by ★ 7.2k • written 11.5 years ago by ▴ 50
0
votes
0
replies
889
views
Error in sqliteExecStatement(con, statement, bind.data)
Microarray ChipName oligo Microarray ChipName oligo
12.0 years ago Guest User ★ 13k
0
votes
4
replies
1.7k
views
AnnotationForge example does not work
GO Cancer ChipName probe affy GO Cancer ChipName probe affy
updated 12.2 years ago by ▴ 120 • written 12.2 years ago by ★ 13k
0
votes
1
reply
1.2k
views
AnnotationDBI
GO ChipName probe affy GO ChipName probe affy
updated 12.4 years ago by 68k • written 12.4 years ago by ★ 13k
0
votes
0
replies
1.1k
views
makeOrgPackageFromNCBI another error - reversed commands
BiocViews GO Organism ChipName biocViews BiocViews BiocViews GO Organism ChipName
12.9 years ago Guest User ★ 13k
0
votes
0
replies
940
views
AnnotationDbi error
Annotation ChipName Annotation ChipName
14.1 years ago marco fabbri ▴ 320
0
votes
1
reply
1.0k
views
building annotation package for porcine
Annotation Cancer ChipName genefilter limma AnnotationDbi Annotation Cancer ChipName
updated 14.3 years ago by ★ 7.2k • written 14.3 years ago by ▴ 270
0
votes
0
replies
782
views
Question regarding Installation of annotation package which was built using SQLforge (Suyog Pol)
Annotation GO Cancer ChipName probe genefilter PROcess Annotation GO Cancer ChipName
15.0 years ago Suyog Pol ▴ 40
0
votes
2
replies
943
views
Question regarding Installation of annotation package which was built using SQLforge (Suyog Pol)
Annotation GO ChipName probe genefilter Annotation GO ChipName probe genefilter
updated 15.0 years ago by 25k • written 15.0 years ago by ▴ 40
0
votes
1
reply
1.3k
views
Question regarding Installation of annotation package which was built using SQLforge
Annotation GO ChipName probe PROcess Annotation GO ChipName probe PROcess
updated 15.1 years ago by ★ 7.4k • written 15.1 years ago by ▴ 40
0
votes
0
replies
1.1k
views
hyperGTest, different Results using different annotation packages
Microarray Annotation GO ChipName db0 GOstats Category Microarray Annotation GO ChipName
15.9 years ago Wiebke Iffert ▴ 20
0
votes
7
replies
2.2k
views
ragene10st
Annotation GO Rattus norvegicus ChipName cdf probe affy AnnotationDbi AffyCompatible GO
updated 15.9 years ago by ▴ 630 • written 16.0 years ago by ▴ 370
0
votes
1
reply
1.9k
views
problem with AnnotationDbi
ChipName db0 affy Category AnnotationDbi ChipName db0 affy Category AnnotationDbi
updated 16.3 years ago by 16k • written 16.3 years ago by ▴ 830
0
votes
1
reply
1.6k
views
ACCNUM match zero using AnnotationDBI package
GO ChipName AnnBuilder AnnotationDbi GO ChipName AnnBuilder AnnotationDbi
updated 16.3 years ago by ★ 7.2k • written 16.3 years ago by ▴ 120
0
votes
9
replies
1.9k
views
xps Error in exonLevel(exonlevel, chiptype) : invalid argument ‘exonlevel’
ChipName affy xps ChipName affy xps
updated 16.8 years ago by ★ 3.9k • written 16.8 years ago by ★ 1.4k
0
votes
0
replies
715
views
affyPLM query
ChipName ChipName
19.5 years ago Caroline Johnston ▴ 70
0
votes
0
replies
925
views
Custom CDF files
ChipName cdf probe makecdfenv gcrma ChipName cdf probe makecdfenv gcrma
20.1 years ago Ken Simpson ▴ 70
21 results • Page 1 of 1
Recent ...
Replies
Comment: Weird p-values using DESeq2? by ATpoint ★ 4.7k
This does not look like normalized counts but raw counts. Consider using `counts(dds, normalized = TRUE)` or the output of `ntd()` or `vst/…
Answer: Weird p-values using DESeq2? by Wolfgang Huber ★ 13k
Dear Ingrid, thank you for asking. Can you provide the input count matrix (you can "pseudonymize" the biological conditions and the gene n…
Comment: How to visualize these pathways using pathview by ingrid.h • 0
Yes I have seen it, thanks.
Comment: Store Matrix in DataFrame Cell by Dario Strbenac ★ 1.6k
It does not appear to work. > DataFrame(name = "test", value = list(matrix(1:4, ncol = 2))) DataFrame with 2 rows and 3 columns …
Comment: Overcoming confounding in batch effect correction by Dario Strbenac ★ 1.6k
Actually, it is directly related. ComBat-seq is a part of [sva][1] package. It should use sva tag. [1]: https://bioconductor.org/package…
Votes
Comment: Weird p-values using DESeq2?
Comment: Overcoming confounding in batch effect correction
Answer: Store Matrix in DataFrame Cell
Answer: enrichGOgradient color change
Comment: Overcoming confounding in batch effect correction
Awards • All
Popular Question to Wolfgang Huber ★ 13k
Teacher to James W. MacDonald 68k
Popular Question to Hervé Pagès 16k
Popular Question to shepherl 4.1k
Popular Question to Gordon Smyth 52k
Locations • All
Germany, 1 minute ago
EMBL European Molecular Biology Laboratory, 11 minutes ago
Wageningen University, Wageningen, the Netherlands, 34 minutes ago
Norway, 1 hour ago
Germany, 2 hours ago
Traffic: 936 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6