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chipenrich
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Unable to find an inherited method for function distanceToNearest for signature GRanges
chipenrich
granges
distancetonearest
function
dataframe
7.0 years ago
rbronste
▴ 60
1
vote
1
reply
891
views
Chipenrich expected fit line
chipenrich
updated 7.0 years ago by
rcavalca
▴ 140 • written 7.1 years ago by
rbronste
▴ 60
1
vote
1
reply
1.0k
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Error with mappability argument
chipenrich
updated 7.5 years ago by
rcavalca
▴ 140 • written 7.5 years ago by
Ashley.Sawle
• 0
1
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2
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1.3k
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chipenrich mm10 error
chipenrich
updated 7.7 years ago by
rcavalca
▴ 140 • written 7.7 years ago by
jamie.gearing
▴ 60
0
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0
replies
985
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chipenrich - Error in .simpleInheritanceGeneric(fdef)
chipenrich
8.1 years ago
Pierre-François Roux
• 0
0
votes
0
replies
2.6k
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DiffBind annotation
Annotation
ChIPpeakAnno
DiffBind
chipenrich
10.2 years ago
Rory Stark
★ 5.2k
6 results • Page
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Comment: Combining RNAseq and microarray data using edgeR/limma-voom
by
Adam Marstrand
• 0
Thank you!
Comment: Combining RNAseq and microarray data using edgeR/limma-voom
by
Adam Marstrand
• 0
Hi Gordon, Thanks for the answer! This makes a lot of sense. Your suggested pipeline (separate processing of datasets -> gene set analyses…
Comment: How many of my genes from my gene list are in each KEGG pathway?
by
josephasmith1310
• 0
> You can compare the number in the column setSize versus the number of > genes in core_enrichment. The former corresponds to the number of…
Comment: EuroBioC2024 abstract submission is open!
by
Esperan
• 0
Great information about the EuroBioC2024 conference! https://openreview.net/group?id=bioconductor.org/EuroBioC/2024/Conferences [slope](htt…
Answer: Combining RNAseq and microarray data using edgeR/limma-voom
by
Gordon Smyth
51k
I agree with James, although I tend to combine analyses using geneset tests rather than by meta analysis tools like GeneMeta. > My questio…
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Answer: Combining RNAseq and microarray data using edgeR/limma-voom
Answer: How do I merge a list of GRanges?
A: p.adjust BH generates duplicate values
Answer: Adjusted p-values become NA when sub-setting samples
Comment: Suggestion for FGSEA and GSEA creation for C57BL/6J Mice
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