Bioconductor Chipenrich

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chipenrich granges distancetonearest function dataframe

7.2 years ago rbronste ▴ 60

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chipenrich

updated 7.2 years ago by rcavalca ▴ 140 • written 7.3 years ago by rbronste ▴ 60

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chipenrich

updated 7.7 years ago by rcavalca ▴ 140 • written 7.7 years ago by Ashley.Sawle • 0

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updated 7.9 years ago by rcavalca ▴ 140 • written 7.9 years ago by jamie.gearing ▴ 60

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8.4 years ago Pierre-François Roux • 0

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Annotation ChIPpeakAnno DiffBind chipenrich

10.4 years ago Rory Stark ★ 5.2k

6 results • Page 1 of 1

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Answer: Using genomicRanges / plyranges to calculate score of peaks within intervals by Michael Love 43k

This should be possible with plyranges using `join_overlap` and `group_by` on the metadata from the tile. E.g. create `tile.id` as a variab…

Answer: Reducing and aggregating GRanges with gaps using plyranges by Michael Love 43k

I added `min.gapwidth` to `reduce_ranges()` in recent plyranges releases: https://github.com/tidyomics/plyranges/pull/105

Answer: Find exact GRanges match keeping metadata columns by Michael Love 43k

You could use `minoverlap` but that requires an integer, not a fraction: ``` gr1 |> join_overlap_left(gr2, minoverlap=6) ``` Plyranges do…

Comment: Unused arguments error without used arguments in GSVA? by 1sunmic2 • 0

It was due to the comma. Thank you!

Answer: Unused arguments error without used arguments in GSVA? by Axel Klenk ★ 1.1k

Hi, here is a good place to ask questions when encountering problems with GSVA. I cannot reproduce this behaviour with the current release…

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Answer: Unused arguments error without used arguments in GSVA?

Unused arguments error without used arguments in GSVA?

Answer: Is it always preferable to recount library sizes of DGEList object in edgeR afte

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Teacher to Axel Klenk ★ 1.1k