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chip
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Restricting differential binding analysis to only TSS-proximal regions
ChIP
csaw
updated 12 weeks ago by
Aaron Lun
★ 28k • written 12 weeks ago by
Luca
• 0
0
votes
1
reply
1.7k
views
use diffbind with normilized bedgraph files from spike ins
diffbind
chip-seq
chip
spike
spike-ins
updated 4.9 years ago by
Rory Stark
★ 5.2k • written 5.0 years ago by
Theo
▴ 10
5
votes
7
replies
2.8k
views
ChIPSeeker enrichPeakOverlap external dataset downloads
chipseeker
chipseq
chip
updated 7.3 years ago by
Guangchuang Yu
★ 1.2k • written 7.3 years ago by
rbronste
▴ 60
1
vote
5
replies
1.8k
views
Coerce several Granges objects to a GrangeList
GRanges
GRangesList
ChIP
10.6 years ago
patrick.schordert
▴ 30
4 results • Page
1 of 1
Recent ...
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Comment: Module membership vs gene significance result and Modules-trait relationships re
by
Vinaya
• 0
Hi. I am having the same issue, and haven't found a solution still.
Comment: Feature Counts - potential bug with outfile.jcounts
by
Tom
• 0
[Penistone Locksmith][1] I think that would be a great idea; a novel junction to annotated junction proximity output column. So if the nove…
Comment: Filtering after DESeq
by
caroline.zanchi
• 0
I am going to try this right now, thanks !
Comment: Bioconductor 3.20 Release Schedule
by
randyprice13102000
• 0
This offers much info https://bioconductor.org/checkResults/release/bioc-LATEST/
Comment: Filtering after DESeq
by
ATpoint
★ 4.8k
The problem is that your prefilter is not group-aware so the behaviour of seeing these sorts of outliers is expected. This is why I always …
Votes
Answer: CluserProfiler message "No gene can be mapped"
A: Minfi issue: return code from pthread_create() is 22
Comment: Filtering after DESeq
Answer: DiffBind; Error: No sites have activity greater than filter value
DiffBind; Error: No sites have activity greater than filter value
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