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chemmineR
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Comparing compounds in CheminneR
Cheminformatics
ChemmineR
ChemmineDrugs
17 months ago
Sean
• 0
0
votes
1
reply
1.1k
views
ChemmineOB expects libopenbabel.7.dylib but latest OpenBabel 2.4.1 contains libopenbabel.5.dylib
cheminf
ChemmineOB
Cheminformatics
ChemmineR
3.5 years ago
adelenelai
• 0
0
votes
0
replies
1.7k
views
How to combined multiple *.mol files into a single *.sdf file using ChemmineR?
ChemmineR
Chemmin
ChemmineOB
3.7 years ago
sukissqz
• 0
3
votes
4
replies
1.6k
views
Error in ChemmineR function propOB() and ChemmineOB prop_OB()
ChemmineR
ChemmineOB
updated 4.0 years ago by
Thomas Girke
★ 1.7k • written 4.1 years ago by
teresadijor
• 0
2
votes
6
replies
1.4k
views
How to remove HCL mols in Chemminer
ChemmineR
Chemistry
updated 5.8 years ago by
khoran
▴ 10 • written 5.9 years ago by
Anthony Nash
▴ 20
1
vote
1
reply
1.1k
views
Bioactivity assay DBs for cheminfo packages
bioassayR
ChemmineR
PubChem
updated 5.9 years ago by
Thomas Girke
★ 1.7k • written 5.9 years ago by
Anthony Nash
▴ 20
1
vote
1
reply
1.1k
views
Where can I locate the bioassayR database?
bioassayr
chemmineR
cheminformatics
5.9 years ago
Anthony Nash
▴ 20
1
vote
4
replies
2.5k
views
How do I convert kegg info on drug to a format allowing me to calculate similarities?
keggrest
chemminer
fmcsr
graph
written 6.9 years ago by
Joris.Meys
• 0
0
votes
0
replies
1.0k
views
Downloading 3D compounds from Pubchem in ChemmineR
chemminer
7.3 years ago
jubilantsundar
• 0
1
vote
2
replies
1.8k
views
drawing chemical from smile 2D/3D
chemminer
updated 7.6 years ago by
Thomas Girke
★ 1.7k • written 7.6 years ago by
Stane
▴ 40
0
votes
0
replies
1.1k
views
Tversky' alpha and beta should not be int, should they?
ChemmineR
7.9 years ago
stephan.struckmann
• 0
0
votes
2
replies
1.7k
views
output of propOB function ChemmineR
ChemmineR
ChemmineOB
ChemmineTools
Drug
7.9 years ago
elisa.micarelli
▴ 10
0
votes
1
reply
2.2k
views
ChemmineR package - fpSim and cmp.similarity - Tanimoto kernels
ChemmineR
updated 8.8 years ago by
Thomas Girke
★ 1.7k • written 8.8 years ago by
ረ
• 0
0
votes
0
replies
1.3k
views
MCS & ChemineR
Network
Clustering
PROcess
ChemmineR
Network
Clustering
PROcess
ChemmineR
11.9 years ago
Thomas Girke
★ 1.7k
0
votes
0
replies
1.4k
views
ChemmineR Help
Clustering
ChemmineR
Clustering
ChemmineR
12.2 years ago
Thomas Girke
★ 1.7k
15 results • Page
1 of 1
Recent ...
Replies
Answer: I am having issues with bowtie2_build
by
James W. MacDonald
67k
Is proof.fa an actual FASTA file? Have you tried using the demo data that comes with the package? See the [vignette under Build Bowtie Inde…
Answer: DEG analysis across multiple timepoints, treatments and tissues
by
Michael Love
43k
Yes, if you think the entire time course can be modified by tissue effects then you would include another set of interaction terms. I re…
Comment: How to visualize these pathways using pathview
by
Guido Hooiveld
★ 4.1k
FYI: a similar, if not identical issue has been reported before (`pathview` has problems visualizing some pathways, but not all). You likel…
Comment: Why select top highly expressed genes based on normalized counts, but then plot
by
Quang NN
▴ 10
I see. Thank you ATpoint!
Comment: how should I apply "cpg.annotate" to TCGA methylation data in hg38 for HM450K?
by
Prakash Sah
• 0
Thanks James!
Votes
Answer: Unable to install nloptr
Answer: ensembldb for Homo Sapiens organism containing superfluous SYMBOL genes?
C: How does edgeR cpm function calculate log(CPM) values?
Answer: Selection of correct coefficients or contrasts in DESeq2
Answer: Selection of correct coefficients or contrasts in DESeq2
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