Bioconductor Cheminformatics

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460

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Cheminformatics ChemmineR ChemmineDrugs

17 months ago Sean • 0

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1.1k

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cheminf ChemmineOB Cheminformatics ChemmineR

3.5 years ago adelenelai • 0

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1.1k

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bioassayr chemmineR cheminformatics

5.9 years ago Anthony Nash ▴ 20

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849

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limma edger deseq2 cheminformatics

updated 6.4 years ago by Aaron Lun ★ 28k • written 6.4 years ago by perdedorium • 0

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1.4k

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cellhts2 cheminformatics

updated 8.2 years ago by Joseph Barry ▴ 160 • written 8.2 years ago by Andreia Fonseca ▴ 810

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2.1k

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software error R cheminformatics package installation eiR

updated 8.7 years ago by khoran ▴ 10 • written 8.7 years ago by rjrich • 0

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1.4k

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Cheminformatics Visualization Cancer Ovarian DEXSeq minfi DESeq2 BaseSpaceR epivizr minfi

11.6 years ago Martin Morgan 25k

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1.4k

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Metabolomics Cheminformatics Visualization xcms Metabolomics Cheminformatics Visualization

15.0 years ago Gabriella Rustici ▴ 60

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1.0k

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Cheminformatics Clustering Cheminformatics Clustering

16.6 years ago Thomas Girke ★ 1.7k

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1.1k

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Cheminformatics Clustering Cheminformatics Clustering

17.4 years ago Thomas Girke ★ 1.7k

10 results • Page 1 of 1

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Answer: I am having issues with bowtie2_build by James W. MacDonald 67k

Is proof.fa an actual FASTA file? Have you tried using the demo data that comes with the package? See the [vignette under Build Bowtie Inde…

Answer: DEG analysis across multiple timepoints, treatments and tissues by Michael Love 43k

Yes, if you think the entire time course can be modified by tissue effects then you would include another set of interaction terms. I re…

Comment: How to visualize these pathways using pathview by Guido Hooiveld ★ 4.1k

FYI: a similar, if not identical issue has been reported before (`pathview` has problems visualizing some pathways, but not all). You likel…

Comment: Why select top highly expressed genes based on normalized counts, but then plot by Quang NN ▴ 10

I see. Thank you ATpoint!

Comment: how should I apply "cpg.annotate" to TCGA methylation data in hg38 for HM450K? by Prakash Sah • 0

Thanks James!

Votes

Answer: Unable to install nloptr

Answer: ensembldb for Homo Sapiens organism containing superfluous SYMBOL genes?

C: How does edgeR cpm function calculate log(CPM) values?

Answer: Selection of correct coefficients or contrasts in DESeq2

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Popular Question to bastien_chassagnol • 0