Showing : cheminformatics • reset
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Comparing compounds in CheminneR
Cheminformatics ChemmineR ChemmineDrugs
17 months ago Sean • 0
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ChemmineOB expects libopenbabel.7.dylib but latest OpenBabel 2.4.1 contains libopenbabel.5.dylib
cheminf ChemmineOB Cheminformatics ChemmineR
3.5 years ago adelenelai • 0
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Where can I locate the bioassayR database?
bioassayr chemmineR cheminformatics
5.9 years ago Anthony Nash ▴ 20
3
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Can limma/other DE algorithms be used for differential analysis of chemical descriptors?
limma edger deseq2 cheminformatics
updated 6.4 years ago by ★ 28k • written 6.4 years ago by • 0
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cellHTS2 importa and analysing data from chemical compound screening
cellhts2 cheminformatics
updated 8.2 years ago by ▴ 160 • written 8.2 years ago by ▴ 810
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Bioc 3.3 Windows 10 eiR package fails to install
software error R cheminformatics package installation eiR
updated 8.7 years ago by ▴ 10 • written 8.7 years ago by • 0
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BioC 2013, July 17 (Developer Day) 18-19: 'Early' registration deadline July 1
Cheminformatics Visualization Cancer Ovarian DEXSeq minfi DESeq2 BaseSpaceR epivizr minfi
11.6 years ago Martin Morgan 25k
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'Cheminformatics in R' workshop at the EBI: 17-18 May 2010
Metabolomics Cheminformatics Visualization xcms Metabolomics Cheminformatics Visualization
14.9 years ago Gabriella Rustici ▴ 60
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R/BioC workshops in Southern California
Cheminformatics Clustering Cheminformatics Clustering
16.6 years ago Thomas Girke ★ 1.7k
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R/BioC workshops in Southern California
Cheminformatics Clustering Cheminformatics Clustering
17.4 years ago Thomas Girke ★ 1.7k
10 results • Page 1 of 1
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Answer: Selection of correct coefficients or contrasts in DESeq2 by swbarnes2 ★ 1.4k
I think you need to include the design you used, and the command you used to call it. The simplest answer is that your two ways of doing t…
Comment: Csaw normalization strategies - general inquiry by Luca • 0
Hello Aaron, About the IP efficiencies, yes definitely and for us, to complicate this experiment further, these batches were generated by …
Comment: How to compare expression levels of genes between scRNAseq and bulkRNAseq? by Quang NN ▴ 10
Thank you ATpoint for your response. In bulkRNAseq, I did have two cell types to compare. But, I want to also see if bulkRNAseq might have …
Answer: Why select top highly expressed genes based on normalized counts, but then plot by ATpoint ★ 4.6k
The choice of variable genes is typically part of a QC process. You select genes that in an unbiased fashion (unbiased because variance cal…
Comment: How to compare expression levels of genes between scRNAseq and bulkRNAseq? by ATpoint ★ 4.6k
My take is that RNA-seq (be it bulk or single-cell) is inherently relative. I don't think you can really "compare" the absolute expression …
Votes
Answer: Csaw normalization strategies - general inquiry
A: DESeq2 interaction term
Comment: Recount3 data correspond to TCGA data
Answer: DESeq2- merging technical vs biological replicates
Answer: SingleCellExperiment convenience function for metadata+expression?
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