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cheminformatics
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Comparing compounds in CheminneR
Cheminformatics
ChemmineR
ChemmineDrugs
17 months ago
Sean
• 0
0
votes
1
reply
1.1k
views
ChemmineOB expects libopenbabel.7.dylib but latest OpenBabel 2.4.1 contains libopenbabel.5.dylib
cheminf
ChemmineOB
Cheminformatics
ChemmineR
3.5 years ago
adelenelai
• 0
1
vote
1
reply
1.1k
views
Where can I locate the bioassayR database?
bioassayr
chemmineR
cheminformatics
5.9 years ago
Anthony Nash
▴ 20
3
votes
1
reply
849
views
Can limma/other DE algorithms be used for differential analysis of chemical descriptors?
limma
edger
deseq2
cheminformatics
updated 6.4 years ago by
Aaron Lun
★ 28k • written 6.4 years ago by
perdedorium
• 0
2
votes
3
replies
1.4k
views
cellHTS2 importa and analysing data from chemical compound screening
cellhts2
cheminformatics
updated 8.2 years ago by
Joseph Barry
▴ 160 • written 8.2 years ago by
Andreia Fonseca
▴ 810
1
vote
3
replies
2.1k
views
Bioc 3.3 Windows 10 eiR package fails to install
software error
R
cheminformatics
package installation
eiR
updated 8.7 years ago by
khoran
▴ 10 • written 8.7 years ago by
rjrich
• 0
0
votes
0
replies
1.4k
views
BioC 2013, July 17 (Developer Day) 18-19: 'Early' registration deadline July 1
Cheminformatics
Visualization
Cancer
Ovarian
DEXSeq
minfi
DESeq2
BaseSpaceR
epivizr
minfi
11.6 years ago
Martin Morgan
25k
0
votes
0
replies
1.4k
views
'Cheminformatics in R' workshop at the EBI: 17-18 May 2010
Metabolomics
Cheminformatics
Visualization
xcms
Metabolomics
Cheminformatics
Visualization
15.0 years ago
Gabriella Rustici
▴ 60
0
votes
0
replies
1.0k
views
R/BioC workshops in Southern California
Cheminformatics
Clustering
Cheminformatics
Clustering
16.6 years ago
Thomas Girke
★ 1.7k
0
votes
0
replies
1.1k
views
R/BioC workshops in Southern California
Cheminformatics
Clustering
Cheminformatics
Clustering
17.4 years ago
Thomas Girke
★ 1.7k
10 results • Page
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Answer: I am having issues with bowtie2_build
by
James W. MacDonald
67k
Is proof.fa an actual FASTA file? Have you tried using the demo data that comes with the package? See the [vignette under Build Bowtie Inde…
Answer: DEG analysis across multiple timepoints, treatments and tissues
by
Michael Love
43k
Yes, if you think the entire time course can be modified by tissue effects then you would include another set of interaction terms. I re…
Comment: How to visualize these pathways using pathview
by
Guido Hooiveld
★ 4.1k
FYI: a similar, if not identical issue has been reported before (`pathview` has problems visualizing some pathways, but not all). You likel…
Comment: Why select top highly expressed genes based on normalized counts, but then plot
by
Quang NN
▴ 10
I see. Thank you ATpoint!
Comment: how should I apply "cpg.annotate" to TCGA methylation data in hg38 for HM450K?
by
Prakash Sah
• 0
Thanks James!
Votes
Answer: Unable to install nloptr
Answer: ensembldb for Homo Sapiens organism containing superfluous SYMBOL genes?
C: How does edgeR cpm function calculate log(CPM) values?
Answer: Selection of correct coefficients or contrasts in DESeq2
Answer: Selection of correct coefficients or contrasts in DESeq2
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