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CHARM qcReport Question
charm charm
10.9 years ago zeynep özkeserli ▴ 160
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working with genome-wide phastCons scores
BSgenome convert BSgenome rtracklayer IRanges charm BSgenome convert BSgenome rtracklayer
11.3 years ago Robert Castelo ★ 3.4k
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Reg: makePdInfoPackage Error in sqliteExecStatement(con, statement, bind.data) : bind.data must have non-zero dimensions
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updated 11.4 years ago by ▴ 50 • written 11.5 years ago by ★ 4.3k
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Reg: makePdInfoPackage Error in sqliteExecStatement(con, statement, bind.data) : bind.data must have non-zero dimensions
Annotation PROcess pdInfoBuilder charm Annotation PROcess pdInfoBuilder charm
11.5 years ago Nitesh Turaga ▴ 50
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Reg: makePdInfoPackage Error in sqliteExecStatement(con, statement, bind.data) : bind.data must have non-zero dimensions
Annotation PROcess pdInfoBuilder charm Annotation PROcess pdInfoBuilder charm
updated 11.5 years ago by ★ 4.3k • written 11.5 years ago by ▴ 50
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ShortRead 3' trimming negative length vectors are not allowed
charm charm
updated 11.7 years ago by 25k • written 11.7 years ago by ▴ 300
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1.4k
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Charm Error - methp
charm charm
11.8 years ago zeynep özkeserli ▴ 160
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1.9k
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Conversion of minfi format MethylSet to methyAnalysis format MethyGenoSet
Cancer charm minfi methyAnalysis Cancer charm minfi methyAnalysis
12.0 years ago Ed Schwalbe ▴ 20
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CHARM: Affymetrix 1.0R tiling arrays import
BSgenome affy BSgenome oligo charm BSgenome affy BSgenome oligo charm
12.0 years ago Guest User ★ 13k
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2.0k
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RCytoscape on Windows
Network charm RCytoscape Network charm RCytoscape
12.2 years ago Paul Shannon ▴ 750
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1.3k
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[package announcement] bumphunter
charm minfi bsseq bumphunter charm minfi bsseq bumphunter
12.2 years ago Kasper Daniel Hansen ★ 6.5k
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13
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2.7k
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CHARM - The following columns in sampleKey...
convert charm convert charm
updated 12.3 years ago by ▴ 120 • written 12.3 years ago by ★ 13k
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13
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2.6k
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Question about interpretation of CHARM results
charm charm
updated 12.5 years ago by ▴ 120 • written 12.5 years ago by ▴ 160
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1
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849
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Scripts for CHARM data analysis
charm charm
updated 12.5 years ago by ★ 4.2k • written 12.5 years ago by ▴ 10
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1.2k
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How can I identify the closest transcript from a chromosome coordinate?
Microarray Genetics probe charm Microarray Genetics probe charm
12.6 years ago Yoo, Seungyeul ▴ 110
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4
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1.9k
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How can I obtain gene name from chromosome location?
Lung charm genomes Lung charm genomes
updated 12.6 years ago by ★ 13k • written 12.6 years ago by ▴ 110
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error in dmrFinder of charm package when there is one sample per group
charm charm
12.6 years ago P. Murakami ▴ 30
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898
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error in dmrFinder of charm package when there is one sample per group
charm charm
12.7 years ago Tarca, Adi ▴ 570
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978
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charm package using MEDIP protocol
charm charm
12.7 years ago Tarca, Adi ▴ 570
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1.4k
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Nimblegen promoter medip array platform design file problem
BiocViews Annotation Organism biocViews pdInfoBuilder charm BiocViews BiocViews Annotation
12.8 years ago zeynep özkeserli ▴ 160
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1.5k
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Nimblegen promoter medip array platform design file problem
BiocViews Annotation Organism biocViews pdInfoBuilder charm BiocViews BiocViews Annotation
12.8 years ago zeynep özkeserli ▴ 160
0
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0
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742
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GOHyperGResult in a data.frame, possible NAMESPACE problem?
charm charm
15.1 years ago Robert Castelo ★ 3.4k
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1.2k
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biomaRt proxy issues
GO biomaRt charm GO biomaRt charm
15.9 years ago Steve Pederson ▴ 60
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1.0k
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Problems reading multiple MAQ map files with ShortRead ReadAligned
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15.9 years ago David Rossell ▴ 100
0
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1
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1.0k
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Problems reading multiple MAQ map files with ShortRead ReadAligned
Cancer PROcess ShortRead charm Cancer PROcess ShortRead charm
15.9 years ago Martin Morgan 25k
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Assistant/Associate Professor Department of Biostatistics
Pathways Bayesian Cancer charm Pathways Bayesian Cancer charm
16.0 years ago Kellie J. Archer, Ph.D. ▴ 120
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2
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5.7k
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biomaRt proxy issues
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updated 16.0 years ago by ▴ 600 • written 16.0 years ago by ▴ 60
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5
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1.5k
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Problem with Rgraphviz on OSX with libgvc
graph Rgraphviz charm graph Rgraphviz charm
updated 18.1 years ago by ★ 7.4k • written 18.1 years ago by ▴ 80
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Comment: WGCNA coupled with differential expression analysis: question about baseline mod by hetaf16210 • 0
@[slope][1] If feasible, consider conducting both analyses. Start with a pooled analysis to identify broad patterns, then conduct separate …
Comment: DESeq2 adujsted p-value cutoff seemingly not working by 980linnet • 0
Stuck on DESeq2 with alpha=.05 for padj cutoff. Can't seem to get the differential expression analysis to stick the landing - it's like try…
Comment: internal error in trio library when trying to use lfmm() in LEA package by PW • 0
>ERROR: unable to open file D://anole_geno.snmf/K1/run1/anole_geno_r1.1.Q. Please, check that the name of the file you provided is correct.…
Comment: DESeq2 adujsted p-value cutoff seemingly not working by Guilherme • 0
Thank you for your answer So the proper way to conduct the analysis is to put the filters in the results() function and later filter the da…
Comment: DiffBind - observation that the default union overlap is actually a gap of 1 bp by Ian D. ▴ 70
Please can you comment on this @rory.
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A: how to extract Granges not overlapping with other ganges?
DESeq2 1.20.0 lfcshrink function
A: LIMMA on RT-PCR data
Answer: Efficiently working with HDF5-backed SingleCellExperiments
Efficiently working with HDF5-backed SingleCellExperiments
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