Bioconductor Cghcall

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875

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cghcall r cgh copy number

7.6 years ago kitcurtius • 0

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1.3k

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aCGH probe DNAcopy aCGH CGHcall aCGH probe DNAcopy aCGH CGHcall

11.4 years ago Guest User ★ 13k

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1.6k

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Normalization CGHcall Normalization CGHcall

13.6 years ago • updated 13.5 years ago Salih Tuna ▴ 30

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1.8k

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CGHcall CGHcall

updated 13.6 years ago by Sean Davis 21k • written 13.6 years ago by Yan Jiao ▴ 140

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CGH CGHcall CGH CGHcall

14.7 years ago Erik Dassi ▴ 10

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1.2k

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aCGH impute DNAcopy aCGH snapCGH CGHcall aCGH impute DNAcopy aCGH snapCGH CGHcall

14.9 years ago Daniel Rico ▴ 110

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Cancer CGHcall CGHregions Cancer CGHcall CGHregions

15.5 years ago Daniel Rico ▴ 110

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1.4k

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aCGH Normalization Cancer aCGH CGHcall copynumber aCGH Normalization Cancer aCGH CGHcall

updated 16.2 years ago by Daniel Rico ▴ 110 • written 16.2 years ago by James Morris ▴ 40

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1.8k

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Cancer Organism MANOR oligo CGHcall BAC Cancer Organism MANOR oligo CGHcall BAC

updated 16.9 years ago by Henrik Bengtsson ★ 2.4k • written 16.9 years ago by Daniel Rico ▴ 110

9 results • Page 1 of 1

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Comment: Cross-validation with multiple control subgroups in limma by Ali Barry ▴ 40

Thanks so much for taking the time here, the insights are much appreciated. I suspected I'd have to ad hoc compare results if I did repeat …

Answer: Cross-validation with multiple control subgroups in limma by Gordon Smyth 52k

limma doesn't do cross-validation or resampling. Like most classical linear modeling procedures in statistics, limma uses a statistical mod…

Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio by Robert Castelo ★ 3.4k

Hi Hervé, thank you very much for your input into how to properly build and manage TxDb objects. gDNAx has two main inputs, one or more BAM…

Comment: Biostrings: Error writing long reads (>200 kbps) with writeQualityScaledXStringS by Aidan ▴ 60

Quick update: this is fixed in a branch awaiting PR to Biostrings (https://github.com/Bioconductor/Biostrings/pull/122). Should be in `deve…

Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings? by Michael Love 43k

For statistical analysis plans, I recommend working with a local statistician or someone familiar with linear models in R. I have to reserv…

Votes

Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio

C: edgeR and lack of counts ID on CPM matrix

A: DESeq2 Following RSEM

A: importing RSEM data into DESeq2

A: Expected counts from RSEM in DESeq2

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