Bioconductor Cghcall

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896

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cghcall r cgh copy number

7.7 years ago kitcurtius • 0

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aCGH probe DNAcopy aCGH CGHcall aCGH probe DNAcopy aCGH CGHcall

11.5 years ago Guest User ★ 13k

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Normalization CGHcall Normalization CGHcall

13.6 years ago Salih Tuna ▴ 30

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CGHcall CGHcall

updated 13.7 years ago by Sean Davis 21k • written 13.7 years ago by Yan Jiao ▴ 140

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CGH CGHcall CGH CGHcall

14.8 years ago Erik Dassi ▴ 10

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aCGH impute DNAcopy aCGH snapCGH CGHcall aCGH impute DNAcopy aCGH snapCGH CGHcall

15.0 years ago Daniel Rico ▴ 110

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Cancer CGHcall CGHregions Cancer CGHcall CGHregions

15.5 years ago Daniel Rico ▴ 110

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aCGH Normalization Cancer aCGH CGHcall copynumber aCGH Normalization Cancer aCGH CGHcall

updated 16.3 years ago by Daniel Rico ▴ 110 • written 16.3 years ago by James Morris ▴ 40

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Cancer Organism MANOR oligo CGHcall BAC Cancer Organism MANOR oligo CGHcall BAC

updated 17.0 years ago by Henrik Bengtsson ★ 2.4k • written 17.0 years ago by Daniel Rico ▴ 110

9 results • Page 1 of 1

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Comment: How to sort negative log2FC or FC in RNAseq for GSEA? by Quang NN ▴ 10

Thank you so much for taking time to provide this clarification!

Comment: How can I generate a heatmap and clustering of differentially expressed genes in by Renuka • 0

Thanks Kelvin i had same doubt .Do i need to do log2 (FPKMcounts) for this

Comment: Is there a way to do DEG analysis across two batches sharing one sample only? by georgeyu703 • 0

Michael, Thank you very much!

Comment: Is there a way to do DEG analysis across two batches sharing one sample only? by Michael Love 43k

Yes, with the knowledge that, it is expected to be underpowered.

Comment: Is there a way to do DEG analysis across two batches sharing one sample only? by georgeyu703 • 0

Thank you, Michael. How? Could you provide more details? Can I just do it as usual, I mean to include batch in the model?

Votes

Answer: SingleCellExperiment convenience function for metadata+expression?

How to correct for tumor purity using DESeq2 to analyze TCGA tumor sample expression.

Answer: EdgeR Biological CVs

Answer: Error in download.file for TCGAutils::symbolsToRanges

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