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Answer: How do I set up my DESeq analysis when I know a few vehicle control samples prov
by
Michael Love
43k
I think it will capture it automatically. E.g. if you use the method that focuses on genes lowly or not affected by the treatment, then the…
Answer: Differing results with DESeq2
by
Michael Love
43k
hi,
I just noticed this popped up on the support site. There are often questions about statistical design plans, and unfortunately I don…
Comment: edgeR::cpm() results in negative values from raw counts of 0
by
Leonardo Collado Torres
★
1.1k
I dove a bit deeper to understand more the differences between `scuttle::logNormCounts()` and `edgeR::cpm(log = TRUE)` at https://github.co…
Comment: edgeR::cpm() results in negative values from raw counts of 0
by
Leonardo Collado Torres
★
1.1k
Thanks for the answer James! I had forgotten about the "PM" part of CPM when I met with Kinnary yesterday!
Comment: edgeR::cpm() results in negative values from raw counts of 0
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Leonardo Collado Torres
★
1.1k
Thank you Gordon for the detailed answer, examples, and link to the unpublished thesis!
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