Showing : cellranger • reset
0
votes
2
replies
800
views
Non-empty droplets versus good quality cells
CellRanger emptyDrops scRNAseq 10X
13 months ago rocanja ▴ 60
0
votes
0
replies
872
views
Read Cellranger outputs in R, combine as SingleCellExperiment
ReadInR Cellranger GEX+Features+VDJ
3.2 years ago gregoire.destreel • 0
0
votes
1
reply
1.4k
views
Aberrant number of cells
CellBarcode DropletUtils emptyDrops() Cellranger scRNAseq
updated 3.0 years ago by ▴ 20 • written 3.2 years ago by • 0
7
votes
12
replies
8.7k
views
How to identify real cells in 10X RNA-seq ?
single-cell 10X Cell calling DropletUtils cellranger
updated 6.1 years ago by ★ 28k • written 6.1 years ago by ▴ 20
4 results • Page 1 of 1
Recent ...
Replies
Comment: Module membership vs gene significance result and Modules-trait relationships re by Vinaya • 0
Hi. I am having the same issue, and haven't found a solution still.
Comment: Feature Counts - potential bug with outfile.jcounts by Tom • 0
[Penistone Locksmith][1] I think that would be a great idea; a novel junction to annotated junction proximity output column. So if the nove…
Comment: Filtering after DESeq by caroline.zanchi • 0
I am going to try this right now, thanks !
Comment: Bioconductor 3.20 Release Schedule by randyprice13102000 • 0
This offers much info https://bioconductor.org/checkResults/release/bioc-LATEST/
Comment: Filtering after DESeq by ATpoint ★ 4.8k
The problem is that your prefilter is not group-aware so the behaviour of seeing these sorts of outliers is expected. This is why I always …
Votes
A: Minfi issue: return code from pthread_create() is 22
Comment: Filtering after DESeq
Answer: DiffBind; Error: No sites have activity greater than filter value
DiffBind; Error: No sites have activity greater than filter value
remove X and Y chromosome genes in RNA-seq data using DESeq2 pipeline
Awards • All
Popular Question to shepherl 4.1k
Popular Question to Dario Strbenac ★ 1.6k
Popular Question to etiennedanis • 0
Popular Question to javier.ruizramirez • 0
Autobiographer to Paul Harrison ▴ 100
Locations • All
Seattle, WA, United States, 5 minutes ago
EMBL Heidelberg, 17 minutes ago
United States, 24 minutes ago
United States, 36 minutes ago
Germany, 37 minutes ago
Traffic: 749 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6