Bioconductor Cellranger

Showing : cellranger • reset

0

votes

2

replies

553

views

CellRanger emptyDrops scRNAseq 10X

7 months ago rocanja ▴ 60

0

votes

0

replies

737

views

ReadInR Cellranger GEX+Features+VDJ

2.8 years ago gregoire.destreel • 0

0

votes

1

reply

1.2k

views

CellBarcode DropletUtils emptyDrops() Cellranger scRNAseq

updated 2.5 years ago by rohitsatyam102 ▴ 20 • written 2.8 years ago by gregoire.destreel • 0

7

votes

12

replies

7.8k

views

single-cell 10X Cell calling DropletUtils cellranger

updated 5.7 years ago by Aaron Lun ★ 28k • written 5.7 years ago by xingxd16 ▴ 20

4 results • Page 1 of 1

Recent ...

Replies

Comment: Combining RNAseq and microarray data using edgeR/limma-voom by Adam Marstrand • 0

Thank you!

Comment: Combining RNAseq and microarray data using edgeR/limma-voom by Adam Marstrand • 0

Hi Gordon, Thanks for the answer! This makes a lot of sense. Your suggested pipeline (separate processing of datasets -> gene set analyses…

Comment: How many of my genes from my gene list are in each KEGG pathway? by josephasmith1310 • 0

> You can compare the number in the column setSize versus the number of > genes in core_enrichment. The former corresponds to the number of…

Comment: EuroBioC2024 abstract submission is open! by Esperan • 0

Great information about the EuroBioC2024 conference! https://openreview.net/group?id=bioconductor.org/EuroBioC/2024/Conferences [slope](htt…

Answer: Combining RNAseq and microarray data using edgeR/limma-voom by Gordon Smyth 51k

I agree with James, although I tend to combine analyses using geneset tests rather than by meta analysis tools like GeneMeta. > My questio…

Votes

Answer: Combining RNAseq and microarray data using edgeR/limma-voom

Answer: How do I merge a list of GRanges?

A: p.adjust BH generates duplicate values

Answer: Adjusted p-values become NA when sub-setting samples

Comment: Suggestion for FGSEA and GSEA creation for C57BL/6J Mice

Awards • All