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cellmix
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Extracting results from a DSA fit to expression data with only a gene markers list
cellmix
7.2 years ago
nrubinstein
• 0
3
votes
3
replies
2.0k
views
Error running CellMix SampleAnalysis vignette
software error
cellmix
vignette
expressionset
7.9 years ago
gabor.halasz
• 0
1
vote
1
reply
2.1k
views
CellMix compare results to CellCODE
cellmix
cellcode
updated 8.6 years ago by
Steve Lianoglou
★ 13k • written 8.6 years ago by
christopher.clarskon15
▴ 20
0
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0
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961
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Coefmap plot without the sorting
coefmap
cellmix
9.0 years ago
thrabe
• 0
0
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0
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1.1k
views
basismarkermap scaling fails for large data
Cellmix
9.0 years ago
thrabe
• 0
0
votes
1
reply
987
views
Access MarkerList attribute
cellmix
9.0 years ago
thrabe
• 0
0
votes
0
replies
1.7k
views
CellMix - Custom matrix with Abbas signature
deconvolution
cellmix
9.5 years ago
carleshf
▴ 10
7 results • Page
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Comment: Cross-validation with multiple control subgroups in limma
by
Ali Barry
▴ 40
Thanks so much for taking the time here, the insights are much appreciated. I suspected I'd have to ad hoc compare results if I did repeat …
Answer: Cross-validation with multiple control subgroups in limma
by
Gordon Smyth
52k
limma doesn't do cross-validation or resampling. Like most classical linear modeling procedures in statistics, limma uses a statistical mod…
Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio
by
Robert Castelo
★ 3.4k
Hi Hervé, thank you very much for your input into how to properly build and manage TxDb objects. gDNAx has two main inputs, one or more BAM…
Comment: Biostrings: Error writing long reads (>200 kbps) with writeQualityScaledXStringS
by
Aidan
▴ 60
Quick update: this is fixed in a branch awaiting PR to Biostrings (https://github.com/Bioconductor/Biostrings/pull/122). Should be in `deve…
Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings?
by
Michael Love
43k
For statistical analysis plans, I recommend working with a local statistician or someone familiar with linear models in R. I have to reserv…
Votes
Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings?
Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio
C: edgeR and lack of counts ID on CPM matrix
A: DESeq2 Following RSEM
A: importing RSEM data into DESeq2
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