Bioconductor CatchSalmon

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catchSalmon edgeR

updated 18 months ago by Gordon Smyth 51k • written 3.1 years ago by Ina Hoeschele ▴ 620

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catchSalmon edgeR

updated 10 months ago by Gordon Smyth 51k • written 4.0 years ago by ATpoint ★ 4.5k

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Comment: miRTarRnaseq library by mercedeh.movassagh ▴ 20

Hi Maria, so what is the code you are using? By the 3rd way to conduct the analysis do you mean looking at the interaction model from part …

Comment: miRTarRnaseq library by María Calvo • 0

Hello, in line with the previous questions, when the miRNA-mRNA interaction analysis is performed (3 rd way to conduct the analysis), I obt…

Answer: heatmap with batch effect by James W. MacDonald 67k

You have only one condition in the second batch, so it's not possible to remove the batch effect. You can probably adjust for it somewhat, …

Answer: how do I convert an Ilumn IDREF to a CPG loci by James W. MacDonald 67k

``` > library(IlluminaHumanMethylationEPICanno.ilm10b4.hg19) > Locations DataFrame with 865859 rows and 3 columns ch…

Answer: Which input data is acceptable for MAST? by Andrew_McDavid ▴ 270

Not too familiar with SCT v2. If it also has a point-mass at zero and the non-zero component is roughly-symmetric, then it might work ok w…

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Popular Question to Andrew_McDavid ▴ 270

Scholar to Ryan C. Thompson ★ 7.9k