Bioconductor Caret

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limma caret lm lmer lme4

updated 5.5 years ago by Aaron Lun ★ 28k • written 5.5 years ago by Sindre ▴ 110

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R machine learning brnn caret

6.6 years ago elisa.micarelli ▴ 10

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classification machinelearning microarray multivariate caret

updated 9.3 years ago by Steve Lianoglou ★ 13k • written 9.3 years ago by svlachavas ▴ 840

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caret extraTrees machinelearning

9.6 years ago liuy12 • 0

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Comment: Rain error: invalid annotation of time points by Dominik • 0

Hi, I kept running into the same issue until I double checked their help and understood, that columns and rows have to be designed in anoth…

Answer: How to generate circular cnetplot and color nodes and edges in the same plot ? by Guido Hooiveld ★ 4.1k

Since the release of `enrichplot` of October 2024, the code of the function `cnetplot` has been completely rewritten by Guangchuang in orde…

Comment: CUT&Tag differential peak analysis using Diffbind, with pre-calculated normaliza by mec25 • 0

I am unable to find the math behind the dba.normalize(), for instance when the E-coli fraction is used is the signal mutliplied by the fact…

Comment: How to sort negative log2FC or FC in RNAseq for GSEA? by Quang NN ▴ 10

Thank you so much for taking time to provide this clarification!

Comment: How can I generate a heatmap and clustering of differentially expressed genes in by Renuka • 0

Thanks Kelvin i had same doubt .Do i need to do log2 (FPKMcounts) for this

Votes

Answer: DESeq2- merging technical vs biological replicates

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How to correct for tumor purity using DESeq2 to analyze TCGA tumor sample expression.

Answer: EdgeR Biological CVs

Answer: Error in download.file for TCGAutils::symbolsToRanges

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