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cager
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Spam:
Can I cancel my British Airways flight and get a refund?
CAGEr
gep2pep
hcg110.db
11 days ago
Haggu
10
6
votes
8
replies
1.7k
views
CAGEr bug report: wrong consensus cluster results
CAGEr
updated 20 months ago by
Charles Plessy
▴ 180 • written 2.3 years ago by
Meng
▴ 30
0
votes
3
replies
1.3k
views
CAGEr: Problem when running getCTSS
CAGEr
updated 3.4 years ago by
Charles Plessy
▴ 180 • written 3.6 years ago by
Sergio
• 0
1
vote
2
replies
1.1k
views
CAGEexp vs CAGErseq
CAGEr
updated 3.4 years ago by
Charles Plessy
▴ 180 • written 4.0 years ago by
MatteoP
▴ 10
0
votes
0
replies
614
views
CAGEr consensusClustersDESeq2()
CAGEr
4.0 years ago
MatteoP
▴ 10
0
votes
5
replies
1.4k
views
CAGEr promoter width graph
CAGEr
updated 3.6 years ago by
Charles
• 0 • written 4.6 years ago by
leehami7407
• 0
1
vote
4
replies
1.1k
views
CAGEr quantilePositions() takes forever to run
CAGEr
quantilePositions
4.9 years ago
mirkocelii
▴ 40
1
vote
6
replies
1.6k
views
Behaviour of getCTSS on a CAGEset - extra reads?
cager
cage
ctss
updated 4.9 years ago by
Charles Plessy
▴ 180 • written 5.7 years ago by
sarac
▴ 20
1
vote
3
replies
1.1k
views
CAGEr: Quantile Values (q_0.1 and q_0.9) in CAGEset / CAGEexp objects
CAGEr
CAGEset
quantile
CAGEexp
4.9 years ago
mirkocelii
▴ 40
4
votes
6
replies
1.6k
views
CAGEr - Error with aggregateTagClusters() - invalid class IRanges object: width(x) cannot contain negative integers
CAGEr
IRanges
aggregateTagClusters
4.9 years ago
mirkocelii
▴ 40
2
votes
5
replies
1.6k
views
Does `clusterCTSS` and `aggregateTagClusters` sum raw-tag counts (and tpm) of the clustered tags into the resultant cluster?
CTSS clustering
tag per million
tag counts
CAGEr
updated 3.4 years ago by
Charles Plessy
▴ 180 • written 5.8 years ago by
regcastillo1990
• 0
0
votes
0
replies
1.2k
views
CAGEr get TSS in bed file
TSS
promoter
cage
cager
6.4 years ago
bharata1803
▴ 60
0
votes
1
reply
1.1k
views
a problem from import CTSStable in CAGEr
cager
CAGEr
6.4 years ago
Zhong JW
• 0
1
vote
2
replies
1.6k
views
error: getCTSS from CAGEexp class with removeFirstG=TRUE
cager
6.5 years ago
Pengcheng Yang
▴ 60
9
votes
18
replies
3.0k
views
bam2CTSS function error from CAGEr package
cager
6.5 years ago
Pengcheng Yang
▴ 60
4
votes
5
replies
1.5k
views
no import.bam function in CAGEr version 1.22.3
cager
6.5 years ago
Pengcheng Yang
▴ 60
1
vote
1
reply
1.1k
views
CAGEr: consensusCluster doesn't have dominant CTSS info
cager
6.9 years ago
Jingwen
▴ 10
0
votes
1
reply
1.3k
views
CAGEr - How to change plot axis range in CAGEr
BRAIN
CAGEr
BRAIN
CAGEr
updated 6.9 years ago by
Charles Plessy
▴ 180 • written 10.7 years ago by
Tobias Hohenauer
▴ 10
1
vote
1
reply
1.3k
views
clusterCTSS() error when running CAGEr
CAGEr
updated 7.5 years ago by
Charles Plessy
▴ 180 • written 7.5 years ago by
bo_yan
▴ 10
2
votes
8
replies
2.4k
views
CAGEr BAM files size issue
CAGEr
BAM
software error
R
biostrings
updated 7.7 years ago by
Charles Plessy
▴ 180 • written 7.7 years ago by
orzechowska.mag
▴ 10
4
votes
5
replies
2.5k
views
CAGEr : problem while filtering the bamFile
CAGEr
cage
updated 3.6 years ago by
jingxian.18
• 0 • written 9.1 years ago by
Vivek.b
▴ 100
0
votes
1
reply
1.2k
views
Scale Y-axis in "plotInterquantileWidth" function for an easier comparison between conditions
CAGEr
updated 10.2 years ago by
James W. MacDonald
68k • written 10.2 years ago by
calibula2000
• 0
22 results • Page
1 of 1
Recent ...
Replies
Comment: DESeq2 - human data, weird results, troubleshooting
by
bd2000
▴ 30
I didn't include all of my code the post would be too long. Here's a link to my GitHub if anyone would like to see the full code: [Full Rst…
Answer: DESeq: Gene is not flagged as differentially expressed despite count data showin
by
James W. MacDonald
68k
The simple answer is that the within-group variability is much higher for the first gene as compared to the second. The Wald statistic is j…
Comment: DESeq: Gene is not flagged as differentially expressed despite count data showin
by
ATpoint
★ 4.8k
> since there doesn't seem to be as much count variability, No? Your CD45 samples range on normalized scale from 2 to 3255. That's 3 orde…
Comment: Ensembl site unresponsive via biomaRt
by
darylruiz6545
• 0
Thank you so much for sharing the link.
Comment: compute_fasta_digest does not match Salmon index hash
by
Alex
• 0
I use the `fastaDigest` tool from [COMBINE-lab/fastaDigest](https://github.com/COMBINE-lab/FastaDigest/), which has the function `compute_f…
Votes
Answer: DESeq: Gene is not flagged as differentially expressed despite count data showin
Two EPIC Methylation Array Analysis Questions
How to get DMR for Infinium methylation EPIC v2
A: GEOquery Fails to Download Series Matrix File
Comment: Gene IDs conversion between Ensembl and NCBI nomenclature for non-model species
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