Bioconductor Cager

Showing : cager • reset

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CAGEr gep2pep hcg110.db

4 weeks ago Haggu 10

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1.7k

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CAGEr

updated 21 months ago by Charles Plessy ▴ 180 • written 2.4 years ago by Meng ▴ 30

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1.3k

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CAGEr

updated 3.5 years ago by Charles Plessy ▴ 180 • written 3.7 years ago by Sergio • 0

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CAGEr

updated 3.5 years ago by Charles Plessy ▴ 180 • written 4.0 years ago by MatteoP ▴ 10

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621

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CAGEr

4.0 years ago MatteoP ▴ 10

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1.4k

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CAGEr

updated 3.6 years ago by Charles • 0 • written 4.6 years ago by leehami7407 • 0

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1.1k

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CAGEr quantilePositions

4.9 years ago mirkocelii ▴ 40

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1.6k

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cager cage ctss

updated 5.0 years ago by Charles Plessy ▴ 180 • written 5.8 years ago by sarac ▴ 20

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1.2k

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CAGEr CAGEset quantile CAGEexp

5.0 years ago mirkocelii ▴ 40

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1.6k

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CAGEr IRanges aggregateTagClusters

5.0 years ago mirkocelii ▴ 40

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1.7k

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CTSS clustering tag per million tag counts CAGEr

updated 3.4 years ago by Charles Plessy ▴ 180 • written 5.9 years ago by regcastillo1990 • 0

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1.2k

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TSS promoter cage cager

6.4 years ago bharata1803 ▴ 60

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1.1k

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cager CAGEr

6.5 years ago Zhong JW • 0

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1.6k

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cager

6.5 years ago Pengcheng Yang ▴ 60

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3.0k

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cager

6.6 years ago • updated 6.5 years ago Pengcheng Yang ▴ 60

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1.5k

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cager

6.6 years ago Pengcheng Yang ▴ 60

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1.1k

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cager

6.9 years ago Jingwen ▴ 10

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1.3k

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BRAIN CAGEr BRAIN CAGEr

updated 7.0 years ago by Charles Plessy ▴ 180 • written 10.7 years ago by Tobias Hohenauer ▴ 10

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1.3k

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CAGEr

updated 7.5 years ago by Charles Plessy ▴ 180 • written 7.5 years ago by bo_yan ▴ 10

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2.5k

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CAGEr BAM software error R biostrings

updated 7.7 years ago by Charles Plessy ▴ 180 • written 7.8 years ago by orzechowska.mag ▴ 10

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2.5k

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CAGEr cage

updated 3.6 years ago by jingxian.18 • 0 • written 9.2 years ago by Vivek.b ▴ 100

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1.3k

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CAGEr

updated 10.2 years ago by James W. MacDonald 68k • written 10.2 years ago by calibula2000 • 0

22 results • Page 1 of 1

Recent ...

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Comment: DiffBind; Error: No sites have activity greater than filter value by etiennedanis • 0

Same issue here as well. This is very weird because I never had this issue before. I started observing this issue with a new ATAC-seq da…

Comment: GSEA preranked analysis downstream of DEseq2 by Ajay • 0

`logFC * -log10(pval)` seems to be the pi-score proposed in this [paper][1] [1]: https://pmc.ncbi.nlm.nih.gov/articles/PMC3957066/

Comment: error in ChAMP loading file by janwilseo • 0

Any update on this post? I also had an issue with this. [erosion control](https://charlestonhydroseeding.com/)

Answer: CluserProfiler message "No gene can be mapped" by James W. MacDonald 68k

Two things. First, the order of your term2gene is backwards (should be term and then gene, like the name), and by default `enricher` adjust…

Comment: Controlling for batch and estrus cycle using DESeq2 in RNA-seq analysis by donnycrimson • 0

One potential workaround might be to adjust for these factors using a combination of design matrices perhaps including batch as a covariate…

Votes

Answer: DiffBind; Error: No sites have activity greater than filter value

DiffBind; Error: No sites have activity greater than filter value

remove X and Y chromosome genes in RNA-seq data using DESeq2 pipeline

How to remove X & Y chromosome genes from RNAseq data

Is it advisable to remove X and Y chromosome genes in mouse bulk RNA-seq data at the level of the count matrix?

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Popular Question to Dario Strbenac ★ 1.6k