Bioconductor Cager

Showing : cager • reset

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1.6k

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CAGEr

updated 17 months ago by Charles Plessy ▴ 180 • written 2.1 years ago by Meng ▴ 30

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1.2k

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CAGEr

updated 3.1 years ago by Charles Plessy ▴ 180 • written 3.3 years ago by Sergio • 0

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998

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CAGEr

updated 3.2 years ago by Charles Plessy ▴ 180 • written 3.7 years ago by MatteoP ▴ 10

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586

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CAGEr

3.7 years ago MatteoP ▴ 10

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1.3k

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CAGEr

updated 3.3 years ago by Charles • 0 • written 4.3 years ago by leehami7407 • 0

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1.0k

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CAGEr quantilePositions

4.6 years ago mirkocelii ▴ 40

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1.5k

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cager cage ctss

updated 4.6 years ago by Charles Plessy ▴ 180 • written 5.5 years ago by sarac ▴ 20

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1.1k

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CAGEr CAGEset quantile CAGEexp

4.6 years ago mirkocelii ▴ 40

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1.4k

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CAGEr IRanges aggregateTagClusters

4.6 years ago mirkocelii ▴ 40

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1.5k

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CTSS clustering tag per million tag counts CAGEr

updated 3.1 years ago by Charles Plessy ▴ 180 • written 5.6 years ago by regcastillo1990 • 0

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1.1k

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TSS promoter cage cager

6.1 years ago bharata1803 ▴ 60

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1.1k

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cager CAGEr

6.1 years ago Zhong JW • 0

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1.5k

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cager

6.2 years ago Pengcheng Yang ▴ 60

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2.7k

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cager

6.2 years ago Pengcheng Yang ▴ 60

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1.4k

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cager

6.2 years ago Pengcheng Yang ▴ 60

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1.0k

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cager

6.6 years ago Jingwen ▴ 10

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1.3k

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BRAIN CAGEr BRAIN CAGEr

updated 6.6 years ago by Charles Plessy ▴ 180 • written 10.4 years ago by Tobias Hohenauer ▴ 10

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1.2k

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CAGEr

updated 7.2 years ago by Charles Plessy ▴ 180 • written 7.2 years ago by bo_yan ▴ 10

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2.3k

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CAGEr BAM software error R biostrings

updated 7.4 years ago by Charles Plessy ▴ 180 • written 7.4 years ago by orzechowska.mag ▴ 10

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2.3k

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CAGEr cage

updated 3.3 years ago by jingxian.18 • 0 • written 8.9 years ago by Vivek.b ▴ 100

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1.2k

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CAGEr

updated 9.9 years ago by James W. MacDonald 67k • written 9.9 years ago by calibula2000 • 0

21 results • Page 1 of 1

Recent ...

Replies

Comment: Cross-validation with multiple control subgroups in limma by Ali Barry ▴ 40

Thanks so much for taking the time here, the insights are much appreciated. I suspected I'd have to ad hoc compare results if I did repeat …

Answer: Cross-validation with multiple control subgroups in limma by Gordon Smyth 52k

limma doesn't do cross-validation or resampling. Like most classical linear modeling procedures in statistics, limma uses a statistical mod…

Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio by Robert Castelo ★ 3.4k

Hi Hervé, thank you very much for your input into how to properly build and manage TxDb objects. gDNAx has two main inputs, one or more BAM…

Comment: Biostrings: Error writing long reads (>200 kbps) with writeQualityScaledXStringS by Aidan ▴ 60

Quick update: this is fixed in a branch awaiting PR to Biostrings (https://github.com/Bioconductor/Biostrings/pull/122). Should be in `deve…

Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings? by Michael Love 43k

For statistical analysis plans, I recommend working with a local statistician or someone familiar with linear models in R. I have to reserv…

Votes

C: edgeR and lack of counts ID on CPM matrix

A: DESeq2 Following RSEM

A: importing RSEM data into DESeq2

A: Expected counts from RSEM in DESeq2

A: Using RSEM reads for DESeq2

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