Showing : cage • reset
1
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6
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Behaviour of getCTSS on a CAGEset - extra reads?
cager cage ctss
updated 4.8 years ago by ▴ 180 • written 5.7 years ago by ▴ 20
3
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2
replies
1.1k
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Genome database and transcription database have different lengths
CAGEfightR CAGE
updated 5.6 years ago by ▴ 180 • written 5.6 years ago by ▴ 20
0
votes
1
reply
940
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CAGEFightR to get CTSS from CAGE error
CAGEFightR CAGE CTSS
5.8 years ago July • 0
0
votes
0
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1.2k
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CAGEr get TSS in bed file
TSS promoter cage cager
6.3 years ago bharata1803 ▴ 60
4
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5
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2.4k
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CAGEr : problem while filtering the bamFile
CAGEr cage
updated 3.5 years ago by • 0 • written 9.1 years ago by ▴ 100
5 results • Page 1 of 1
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Comment: DepMap data mismatch by Laurent Gatto 1.6k
It might be due to different versions. The repacked/cleaned data in the `depmap` R/Bioconductor package is old, but the latest files can al…
Comment: Conumee2 - CNV.summaryplot() by James W. MacDonald 68k
If you are using `conumee2`, then you are in the wrong place. That isn't a Bioconductor package (yet? No idea if they have/will submit it).
Answer: myvariant error by James W. MacDonald 68k
You don't show anything about the data you are annotating, so it's hard to say what the problem might be. Does the example data work for yo…
Answer: Conumee2 - CNV.summaryplot() by James W. MacDonald 68k
There doesn't appear to be a function called `CNV.summaryplot` in `conumee`. What package does that function come from?
Comment: Use of limma R package with targeted proteomics for DE analysis by svlachavas ▴ 840
Dear Gordon, thank you for returning back ! Actually the output is not "NPX"-as indeed it most frequent output for a lot of pannels-but as …
Votes
A: What is the "linear model" part used for in Limma?
Comment: Use of limma R package with targeted proteomics for DE analysis
A: Unbalanced experiment with multiple samples from each patient.
Unbalanced experiment with multiple samples from each patient.
Answer: Vertical line at A=0, nothing else, on MA plot
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