Bioconductor Bwa

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bwa Rsamtools

4.0 years ago sbcn ▴ 80

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alignment BWA Burrows-Wheeler Alignment Tool

6.8 years ago modarzi ▴ 10

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3.2k

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rsubread BWA NGS

updated 8.6 years ago by Wei Shi ★ 3.6k • written 8.6 years ago by tarek.mohamed ▴ 10

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R medip-seq medips bwa

updated 8.7 years ago by Lukas Chavez ▴ 570 • written 8.7 years ago by stb • 0

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5.2k

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bwa ngs

updated 9.7 years ago by Gordon Smyth 52k • written 9.7 years ago by KB ▴ 50

5 results • Page 1 of 1

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Comment: DESeq2 - human data, weird results, troubleshooting by bd2000 ▴ 30

I didn't include all of my code the post would be too long. Here's a link to my GitHub if anyone would like to see the full code: [Full Rst…

Answer: DESeq: Gene is not flagged as differentially expressed despite count data showin by James W. MacDonald 68k

The simple answer is that the within-group variability is much higher for the first gene as compared to the second. The Wald statistic is j…

Comment: DESeq: Gene is not flagged as differentially expressed despite count data showin by ATpoint ★ 4.8k

> since there doesn't seem to be as much count variability, No? Your CD45 samples range on normalized scale from 2 to 3255. That's 3 orde…

Comment: Ensembl site unresponsive via biomaRt by darylruiz6545 • 0

Thank you so much for sharing the link.

Comment: compute_fasta_digest does not match Salmon index hash by Alex • 0

I use the `fastaDigest` tool from [COMBINE-lab/fastaDigest](https://github.com/COMBINE-lab/FastaDigest/), which has the function `compute_f…

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Answer: DESeq: Gene is not flagged as differentially expressed despite count data showin

Two EPIC Methylation Array Analysis Questions

How to get DMR for Infinium methylation EPIC v2

A: GEOquery Fails to Download Series Matrix File

Comment: Gene IDs conversion between Ensembl and NCBI nomenclature for non-model species

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