Showing : bsseq • reset
4
votes
9
replies
1.1k
views
Memory errors using read.bismark?
dmrseq bsseq
9 months ago • updated 8 months ago Juan Higareda • 0
0
votes
1
reply
579
views
No output from read.bismark with bismark cov.files
bsseq methylation
updated 10 months ago by 67k • written 10 months ago by • 0
6
votes
5
replies
1.8k
views
error message when I use the bsseq read.bismark command to read a genome wide cytosine report generated by bismark.
bsseq
updated 17 months ago by ▴ 750 • written 18 months ago by ▴ 30
1
vote
3
replies
2.6k
views
read.bismark() ->Error in manager$availability[[as.character(result$node)]] <- TRUE : wrong args for environment subassignment
methylSig bsseq
updated 2.4 years ago by ▴ 750 • written 2.4 years ago by • 0
0
votes
2
replies
1.1k
views
Locating nearest genes in RRBS analysis
hiAnnotator bsseq DifferentialMethylation edgeR RRBSdata
2.7 years ago Mageiros • 0
0
votes
1
reply
1.8k
views
Gene level methylation values
methylation methylKit bsseq
updated 3.3 years ago by ▴ 10 • written 3.6 years ago by ▴ 80
0
votes
0
replies
955
views
DSS smoothing RRBS and strand collapse
DSS BSSeq
4.9 years ago stephanie.rialle • 0
0
votes
1
reply
949
views
Varying results from DSS when specifying different BSobj
DSS DSS-single bsseq
updated 5.3 years ago by 67k • written 5.3 years ago by • 0
0
votes
3
replies
1.5k
views
Determination of Hypo- or Hyper- methylation
dmrseq bsseq
updated 6.7 years ago by 67k • written 6.7 years ago by • 0
1
vote
2
replies
1.2k
views
Request to remove requirement for gr to have widths 1 in BSseq constructor
bsseq r package
updated 6.7 years ago by • 0 • written 6.7 years ago by ▴ 140
7
votes
5
replies
2.2k
views
Strange error in bsseq when trying to assign seqinfo
bsseq genomeinfodb genomicranges seqinfo
written 6.7 years ago by ▴ 140
0
votes
6
replies
2.2k
views
BSmooth 'names' attribute must be the same length as the vector
bsseq bsmooth
7.3 years ago ravi.tharakan • 0
1
vote
6
replies
2.0k
views
Unusually long running times for getMeth function since latest release
bsseq delayedarray
updated 7.6 years ago by ▴ 750 • written 7.6 years ago by ★ 1.9k
2
votes
3
replies
2.0k
views
bsseq combineList: how to get an HDF5Array-backed object as return value?
bsseq
updated 7.7 years ago by ▴ 750 • written 7.7 years ago by ▴ 20
0
votes
4
replies
2.1k
views
Error while smoothing BS-seq data with bsseq
bsseq
updated 7.8 years ago by • 0 • written 9.3 years ago by • 0
0
votes
6
replies
2.3k
views
BSmooth error during the smoothing step for a subset of files
bsseq bsmooth
updated 7.8 years ago by ▴ 750 • written 7.9 years ago by • 0
0
votes
1
reply
1.5k
views
warning message with BSseq function
bsseq
updated 7.9 years ago by ★ 6.5k • written 7.9 years ago by • 0
1
vote
3
replies
1.6k
views
BSmooth: mclapply error when smoothing using BSmooth
bsseq bsmooth
8.0 years ago zuupcat • 0
0
votes
0
replies
1.1k
views
A few questions about BSseq package
bsseq
8.1 years ago Stephen • 0
0
votes
0
replies
1.2k
views
Does bsseq package work with technical replicates?
bsseq WGBS
8.2 years ago Welliton de Souza ▴ 70
4
votes
2
replies
1.7k
views
Bounded Regression with Limma for RRBS?
limma rrbs bsseq
updated 8.6 years ago by ★ 28k • written 8.6 years ago by • 0
0
votes
3
replies
2.1k
views
Is there any way to set bsseq object as 'smoothed'?
bsseq bisulfite
8.8 years ago biohack92 • 0
1
vote
3
replies
2.1k
views
bsseq BSmooth error
bsseq
8.8 years ago enricoferrero ▴ 680
7
votes
11
replies
4.2k
views
t-statistic cutoff for finding DMRs with bsseq
bsseq dmr ttest pvalue
updated 9.0 years ago by 67k • written 9.0 years ago by ▴ 680
1
vote
0
replies
1.9k
views
Multiple linear regression model for DMR detection?
methylation linear model dmr bsseq biseq
9.2 years ago enricoferrero ▴ 680
6
votes
14
replies
5.7k
views
How to correctly import Bismark coverage files into bsseq?
bsseq bismark methylation
9.2 years ago enricoferrero ▴ 680
0
votes
0
replies
2.1k
views
Job: Bioinformatics Data Analyst - IMP/IMBA Vienna
chipseq atac-seq gro-seq bsseq rnaseq Job
9.3 years ago Jaritz,Markus ▴ 20
1
vote
2
replies
2.8k
views
BS-seq differential methylation analysis using continuous variable
dmr methylation deseq2 bsseq biseq
updated 9.3 years ago by ★ 6.5k • written 9.3 years ago by ▴ 680
0
votes
2
replies
2.4k
views
Issue with SummarizedExperiment thru DSS::makeBSseqData
DSS bsseq summarizedexperiment
9.4 years ago Tim Peters ▴ 200
0
votes
4
replies
3.0k
views
Error using Bsmooth.tstat due to NAs
Coverage bsseq
updated 15 months ago by • 0 • written 10.4 years ago by ★ 13k
0
votes
3
replies
2.9k
views
How to handle BSsmooth.tstat for single replicate samples? Error: need at least two non-NA values to interpolate
bsseq Bsmooth
updated 15 months ago by • 0 • written 9.9 years ago by • 0
0
votes
2
replies
2.2k
views
bsmooth and bsseq for RRBS
bsseq bsseq
updated 11.0 years ago by ★ 4.2k • written 11.0 years ago by ★ 13k
1
vote
2
replies
1.7k
views
dmrFinder error
bsseq bsseq
updated 11.3 years ago by ★ 6.5k • written 11.3 years ago by ★ 13k
0
votes
1
reply
1.3k
views
bsseq in devel
bsseq bsseq
updated 11.6 years ago by ★ 4.2k • written 11.6 years ago by ★ 6.5k
0
votes
2
replies
2.2k
views
bsseq and BSmooth with RRBS
Sequencing bsseq Sequencing bsseq
updated 12.0 years ago by ★ 6.5k • written 12.0 years ago by ▴ 650
0
votes
1
reply
1.7k
views
Minimal input data format for bsseq
Sequencing Alignment bsseq Sequencing Alignment bsseq
updated 12.1 years ago by ★ 6.5k • written 12.1 years ago by ▴ 20
0
votes
0
replies
1.2k
views
[package announcement] bumphunter
charm minfi bsseq bumphunter charm minfi bsseq bumphunter
12.2 years ago Kasper Daniel Hansen ★ 6.5k
0
votes
0
replies
1.6k
views
Package announcement: bsseq
Sequencing Alignment Cancer Colon bsseq Sequencing Alignment Cancer Colon bsseq
12.5 years ago Kasper Daniel Hansen ★ 6.5k
38 results • Page 1 of 1
Recent ...
Replies
Comment: Unused arguments error without used arguments in GSVA? by 1sunmic2 • 0
It was due to the comma. Thank you!
Answer: Unused arguments error without used arguments in GSVA? by Axel Klenk ★ 1.1k
Hi, here is a good place to ask questions when encountering problems with GSVA. I cannot reproduce this behaviour with the current release…
Answer: Restricting differential binding analysis to only TSS-proximal regions by Aaron Lun ★ 28k
Seems reasonable to filter out windows outside of the TSS if you don't care about those events. IIRC the `discard` option will ignore any f…
Comment: Sample-specific methylation values using QSEA by User3088 • 0
Thanks Simon. I got the sample-specific methylation values by using '**samples=getSampleNames**' ``` result=makeTable(qs=prad_QSEAset, glm=…
Comment: input for singR function by iamin053 • 0
Hi Paria, I'm wondering if you were able to get an answer on this please. I would greatly appreciate any comments!
Votes
Answer: Unused arguments error without used arguments in GSVA?
Answer: Unused arguments error without used arguments in GSVA?
Answer: Unused arguments error without used arguments in GSVA?
Unused arguments error without used arguments in GSVA?
Answer: Is it always preferable to recount library sizes of DGEList object in edgeR afte
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