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brainarray
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2
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4
replies
1.9k
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rma summarization error when normalizing using oligo and brainarray cdf
oligo
brainarray
mbni
5.9 years ago
Moosa
• 0
0
votes
5
replies
2.3k
views
Annotating Expression Set for GSVA w/ Brainarray Human Gene 1.1 ST Array CDF
bioconductor
brainarray
genefilter
oligo
updated 6.9 years ago by
James W. MacDonald
68k • written 6.9 years ago by
kdyson
• 0
4
votes
3
replies
1.4k
views
How to set custom Brainarray annotation for Biobase ExpressionSet object?
affymetrix microarrays
expressionset
biobase
annotation
brainarray
updated 7.8 years ago by
James W. MacDonald
68k • written 7.8 years ago by
lykhenko.olexandr
• 0
2
votes
1
reply
1.8k
views
BrainArray Custom CDFs and oligo
oligo
brainarray
rma
customcdf
updated 8.2 years ago by
James W. MacDonald
68k • written 8.2 years ago by
lcordeiro
• 0
0
votes
3
replies
1.8k
views
UPC and Sequence file to remove GC bias
UPC_Generic_ExpressionSet
brainarray
updated 10.1 years ago by
Stephen Piccolo
▴ 600 • written 10.1 years ago by
sanj
▴ 20
5 results • Page
1 of 1
Recent ...
Replies
Comment: Module membership vs gene significance result and Modules-trait relationships re
by
Vinaya
• 0
Hi. I am having the same issue, and haven't found a solution still.
Comment: Feature Counts - potential bug with outfile.jcounts
by
Tom
• 0
[Penistone Locksmith][1] I think that would be a great idea; a novel junction to annotated junction proximity output column. So if the nove…
Comment: Filtering after DESeq
by
caroline.zanchi
• 0
I am going to try this right now, thanks !
Comment: Bioconductor 3.20 Release Schedule
by
randyprice13102000
• 0
This offers much info https://bioconductor.org/checkResults/release/bioc-LATEST/
Comment: Filtering after DESeq
by
ATpoint
★ 4.8k
The problem is that your prefilter is not group-aware so the behaviour of seeing these sorts of outliers is expected. This is why I always …
Votes
A: Minfi issue: return code from pthread_create() is 22
Comment: Filtering after DESeq
Answer: DiffBind; Error: No sites have activity greater than filter value
DiffBind; Error: No sites have activity greater than filter value
remove X and Y chromosome genes in RNA-seq data using DESeq2 pipeline
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