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brainarray
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rma summarization error when normalizing using oligo and brainarray cdf
oligo
brainarray
mbni
5.7 years ago
Moosa
• 0
0
votes
5
replies
2.2k
views
Annotating Expression Set for GSVA w/ Brainarray Human Gene 1.1 ST Array CDF
bioconductor
brainarray
genefilter
oligo
updated 6.7 years ago by
James W. MacDonald
68k • written 6.7 years ago by
kdyson
• 0
4
votes
3
replies
1.4k
views
How to set custom Brainarray annotation for Biobase ExpressionSet object?
affymetrix microarrays
expressionset
biobase
annotation
brainarray
updated 7.6 years ago by
James W. MacDonald
68k • written 7.6 years ago by
lykhenko.olexandr
• 0
2
votes
1
reply
1.8k
views
BrainArray Custom CDFs and oligo
oligo
brainarray
rma
customcdf
updated 8.0 years ago by
James W. MacDonald
68k • written 8.1 years ago by
lcordeiro
• 0
0
votes
3
replies
1.8k
views
UPC and Sequence file to remove GC bias
UPC_Generic_ExpressionSet
brainarray
updated 9.9 years ago by
Stephen Piccolo
▴ 600 • written 9.9 years ago by
sanj
▴ 20
5 results • Page
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Comment: Problem using locateVariants() from the VariantAnnotation package
by
Marco
• 0
Ok, I think I found the problem. By looking at the `locateVariants()` source code, I was able to pinpoint that the problems is when trying …
Comment: Conumee for EPIC and EPICv2 copy number
by
Adam
• 0
As described on the [github](https://github.com/hovestadtlab/conumee2) the way to do this is using array_type = c("EPIC", "EPICv2") This i…
Comment: graper 1.22 Build is Broken
by
shepherl
4.1k
This is not an appropriate place to report this. this is for usage questions. maintainers are notified automatically when it is failing on …
Comment: graper 1.22 Build is Broken
by
shepherl
4.1k
This post does not fit the theme of this forum.
Comment: Unbalanced experiment with multiple samples from each patient.
by
canarias
• 0
Hi Aaron, I'm faced with an analysis that has basically the same problem as OP had, but is probably even more unbalanced: In most cases, I…
Votes
A: Unbalanced experiment with multiple samples from each patient.
Unbalanced experiment with multiple samples from each patient.
Answer: Vertical line at A=0, nothing else, on MA plot
Answer: GSVA Error Code "Calling gsva(expr=., gset.idx.list=., method=., ...) is defunct
Answer: Group-specific condition effects with individuals nested: matrix is not full ra
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