Showing : bplapply • reset
1
vote
4
replies
2.7k
views
BiocParallel: What its the best way to pass large a dataset for parallel processing?
bioconductor bplapply bpiterate iterator BiocParallel
updated 5.8 years ago by 25k • written 5.8 years ago by ▴ 170
6
votes
7
replies
3.0k
views
bplapply with progressbar
bplapply progressbar
updated 6.5 years ago by 25k • written 6.5 years ago by • 0
1
vote
6
replies
2.1k
views
Disable messages for bplapply when in parallel
biocparallel bplapply
updated 7.1 years ago by 25k • written 7.1 years ago by ▴ 30
0
votes
8
replies
2.1k
views
`bplapply` breaks down (BiocParallel_1.6.6, R 3.3.1, openSUSE Leap)
biocparallel bplapply Suse error process
updated 8.4 years ago by • 0 • written 8.4 years ago by • 0
3
votes
2
replies
1.5k
views
bplapply doesn't work in the multicore mode on mac os x
bplapply multicoreParam mac os x
8.5 years ago gmerino ▴ 20
3
votes
4
replies
1.5k
views
bplapply stalling upon error with large data objects
biocparallel bplapply multicore
updated 8.7 years ago by 25k • written 8.7 years ago by ★ 28k
4
votes
3
replies
3.2k
views
Problem with summarizeOverlaps() when reading >1 BAM file: "stop worker failed"
summarizeoverlaps rnaseq bplapply rangedsummarizedexperiment read counting
8.8 years ago ErickF ▴ 40
4
votes
1
reply
6.2k
views
BPPARAM = bpparam() takes longer than using BPPARAM = SerialParam()
bplapply
updated 9.0 years ago by 25k • written 9.1 years ago by ▴ 10
12
votes
11
replies
5.0k
views
Memory usage for bplapply -- is the entire environment copied over to each worker thread?
bplapply biocparallel deseq2
updated 9.8 years ago by ★ 6.8k • written 9.8 years ago by ▴ 40
0
votes
0
replies
1.4k
views
Unexpected recursive unlist of bplapply (BiocParallel) results when using only one worker
biocparallel bplapply
10.0 years ago akaever ▴ 30
10 results • Page 1 of 1
Recent ...
Replies
Comment: CluserProfiler message "No gene can be mapped" by Carolina • 0
There is, the overlap that reads out is ( Genes in common: 368 of 368 ). Here is the link for [background genes][1], [term2gene][2], [term2…
Comment: Differing results with DESeq2 by JKim • 0
My two cents. I think it would be more straightforward if you use cellmeans model. Have a look at [A guide to creating design matrices for …
Answer: CluserProfiler message "No gene can be mapped" by James W. MacDonald 68k
Your gene IDs are things like this: `Mpyr-NLJ1B.v3.hap1.scaffold1.g290550`, and the genes in your term2gene table are things like this: `Mp…
Answer: RNA-seq input to GRaNIE by James W. MacDonald 68k
This is [covered in the vignette.][1] [1]: https://bioconductor.org/packages/release/bioc/vignettes/GRaNIE/inst/doc/GRaNIE_packageDe…
Answer: Help using reduceSimMatrix with a custom annotation by sergisayolspuig ▴ 80
Hi there, `reduceSimMatrix()` expects a "GOALL" keytype in the OrgDb object when called with `children=TRUE` (which is the default for thi…
Votes
remove X and Y chromosome genes in RNA-seq data using DESeq2 pipeline
How to remove X & Y chromosome genes from RNAseq data
Is it advisable to remove X and Y chromosome genes in mouse bulk RNA-seq data at the level of the count matrix?
A: Unbalanced experiment with multiple samples from each patient.
A: Understanding contrasts limma
Awards • All
Popular Question to mohammedtoufiq91 ▴ 10
Popular Question to Kinnary ▴ 20
Popular Question to sergisayolspuig ▴ 80
Popular Question to richardallenfriedmanbrooklyn ▴ 30
Scholar to Gordon Smyth 52k
Locations • All
WEHI, Melbourne, Australia, 1 hour ago
United States, 2 hours ago
United States, 2 hours ago
The city by the bay, 2 hours ago
Finland, 3 hours ago
Traffic: 821 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6