Bioconductor Bootstrap

Showing : bootstrap • reset

vote

replies

1.8k

views

salmon rna-seq swish bootstrap fishpond

updated 3.0 years ago by Michael Love 43k • written 3.0 years ago by samuelcjx • 0

votes

replies

1.4k

views

salmon tximport bootstrap

updated 4.9 years ago by julia.jefferson23 • 0 • written 4.9 years ago by Cindy • 0

votes

replies

1.1k

views

tree bootstrap dgelist plotmds

6.9 years ago Larry K. • 0

votes

replies

979

views

jackknifing R microarray bootstrap

7.6 years ago bhgyu ▴ 30

vote

replies

1.8k

views

GSVM bootstrap snow

updated 8.1 years ago by Robert Castelo ★ 3.4k • written 8.1 years ago by mforde84 ▴ 20

votes

4.1k

views

ape bootstrap node phylogenetic tree

9.6 years ago wd ▴ 30

votes

1.9k

views

deseq2 bootstrap differential expression

updated 9.9 years ago by Michael Love 43k • written 9.9 years ago by David Eccles (gringer) ▴ 30

7 results • Page 1 of 1

Recent ...

Replies

Comment: displaying the differential expression with deseq2 over 4X2 samples with the in by Martijn • 0

thanks James, but if I do pairwise analyses per subject, I get the impression that I only get the intercepts per gene. Do you mean regardin…

Comment: plyranges: find exact GRanges match keeping metadata columns by alexis.weinreb • 0

Thank you, this does clarify the available options.

Answer: displaying the differential expression with deseq2 over 4X2 samples with the in by James W. MacDonald 67k

If you have paired data you should block on subject, which is algebraically the same as fitting a model on the difference between treated a…

Answer: How to compare expression levels of genes between scRNAseq and bulkRNAseq? by jodan • 0

Your approach sounds solid! You might also consider plotting a scatter plot comparing log2 fold changes from both datasets to identify gene…

Answer: Unused arguments error without used arguments in GSVA? by jodan • 0

It looks like the ssgseaParam function might not be passing the correct parameters to GSVA::gsva(). The error suggests that minSize and max…

Votes

Answer: Find exact GRanges match keeping metadata columns

Answer: Unused arguments error without used arguments in GSVA?

Awards • All