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Reproducibility issue with scran together with lapply and BiocParallel
scran
BiocParallel
bluster
12 months ago
ATpoint
★ 4.8k
2
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728
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Bluster and Varieties of Louvain Clulstering
bluster
updated 12 months ago by
ATpoint
★ 4.8k • written 12 months ago by
Dario Strbenac
★ 1.6k
2
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1
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740
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Existence of Bioconductor versus Seurat Software Ecosystems Quantitative Comparison
scran
bluster
scater
scuttle
updated 13 months ago by
ATpoint
★ 4.8k • written 13 months ago by
Dario Strbenac
★ 1.6k
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clusterSweep Warning k Capped
bluster
15 months ago
Dario Strbenac
★ 1.6k
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Comment: Filtering after DESeq
by
caroline.zanchi
• 0
... I did it. It does filter out quite a bit of genes : ``` keep <- filterByExpr(dds, group="host_treatment_generation",min.count = 10, mi…
Comment: Module membership vs gene significance result and Modules-trait relationships re
by
Vinaya
• 0
Hi. I am having the same issue, and haven't found a solution still.
Comment: Feature Counts - potential bug with outfile.jcounts
by
Tom
• 0
[Penistone Locksmith][1] I think that would be a great idea; a novel junction to annotated junction proximity output column. So if the nove…
Comment: Filtering after DESeq
by
caroline.zanchi
• 0
I am going to try this right now, thanks !
Comment: Bioconductor 3.20 Release Schedule
by
randyprice13102000
• 0
This offers much info https://bioconductor.org/checkResults/release/bioc-LATEST/
Votes
Answer: CluserProfiler message "No gene can be mapped"
A: Minfi issue: return code from pthread_create() is 22
Comment: Filtering after DESeq
Answer: DiffBind; Error: No sites have activity greater than filter value
DiffBind; Error: No sites have activity greater than filter value
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