Bioconductor Blocking

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1.0k

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voom blocking limma

updated 17 months ago by Gordon Smyth 52k • written 17 months ago by Gerhard Thallinger ▴ 180

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947

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edgeR blocking

updated 3.8 years ago by Yunshun Chen ▴ 900 • written 3.8 years ago by Molly • 0

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1.2k

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diffbind blocking model

updated 4.3 years ago by Rory Stark ★ 5.2k • written 5.4 years ago by melnuesch ▴ 10

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1.7k

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edger limma paired blocking ruvseq

updated 4.8 years ago by Gordon Smyth 52k • written 4.8 years ago by ScA • 0

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2.9k

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limma repeated measurements blocking random effects

updated 5.0 years ago by Gordon Smyth 52k • written 5.0 years ago by Jane ▴ 10

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4.2k

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limma edger blocking paired samples

updated 6.3 years ago by Gordon Smyth 52k • written 6.3 years ago by anou ▴ 10

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1.0k

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diffbind differential binding analysis blocking

updated 7.1 years ago by Rory Stark ★ 5.2k • written 7.2 years ago by zhangly811 • 0

7 results • Page 1 of 1

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Comment: sesameDataCache is not work properly on my system by Samreen • 0

Any luck with this? I have tried all of the above and it still doesn't work. This is my session info and I'm on a cluster computing environ…

Answer: Using tximport for kallisto aligned TOIL data by James W. MacDonald 68k

If you just have the transcript data, you probably don't need (and maybe cannot use) `tximport`. Instead you could just do the naive thing …

Answer: Reading gene expression data in GPR format and converting it to xlsx format by James W. MacDonald 68k

Setting aside the inadvisability of putting these data into Excel (and I should point out that these data are not single-cell, but instead …

Comment: concentration tables suitable as input for new packages? by wilkinson • 0

I am grateful for your response. Software such as "Spectra" may parse MS-data to generate tables of concentrations, for instance. But inste…

Comment: Removing UTR from GTF for gene quantification by ATpoint ★ 4.7k

Consider asking at biostars or bioinformatics reddit, since this is not directly related to a Bioconductor problem. Anyway, a couple of th…

Votes

Answer: Differential expression of proteins using somascan data

Answer: Surprising behavior for DEXseq dispersion estimate plot?

Answer: Handle zero effective gene length when tximport RSEM results

Handle zero effective gene length when tximport RSEM results

How to remove genes with 0 counts in tximport?

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