Bioconductor Bitseq

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1.5k

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BitSeq bitseq rnaseq

updated 9.3 years ago by Ryan C. Thompson ★ 7.9k • written 9.3 years ago by Sam McInturf ▴ 300

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1.2k

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bitseq paired samples

updated 9.4 years ago by panagiotis.papastamoulis ▴ 30 • written 9.4 years ago by MariaJoseG • 0

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3.7k

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dexseq bitseq cuffdiff Differential exon usage isoforms

9.6 years ago • updated 9.5 years ago elle ▴ 10

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1.9k

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bitseq spliceR

9.7 years ago • updated 9.6 years ago elle ▴ 10

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1.1k

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BitSeq

updated 9.6 years ago by Antti Honkela ▴ 50 • written 9.6 years ago by dietmar.pils • 0

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1.6k

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dexseq bitseq spliceR

9.7 years ago elle ▴ 10

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1.4k

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Alignment PROcess BitSeq Alignment PROcess BitSeq

updated 11.7 years ago by Maayan Kreitzman ▴ 30 • written 11.7 years ago by Peter Glaus ▴ 70

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1.2k

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Alignment PROcess BitSeq Alignment PROcess BitSeq

updated 11.8 years ago by Peter Glaus ▴ 70 • written 11.8 years ago by Maayan Kreitzman ▴ 30

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1.2k

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Transcription RNASeq safe BitSeq Transcription RNASeq safe BitSeq

11.9 years ago Peter Glaus ▴ 70

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1.2k

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RNASeq safe BitSeq RNASeq safe BitSeq

11.9 years ago Dave Gerrard ▴ 40

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1.1k

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RNASeq BitSeq RNASeq BitSeq

updated 11.9 years ago by Peter Glaus ▴ 70 • written 11.9 years ago by Dave Gerrard ▴ 40

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1.9k

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BitSeq BitSeq

updated 12.1 years ago by Peter Glaus ▴ 70 • written 12.1 years ago by Fatemehsadat Seyednasrollah ▴ 260

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948

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BitSeq BitSeq

12.1 years ago Fatemehsadat Seyednasrollah ▴ 260

13 results • Page 1 of 1

Recent ...

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Comment: Cross-validation with multiple control subgroups in limma by Ali Barry ▴ 40

Thanks so much for taking the time here, the insights are much appreciated. I suspected I'd have to ad hoc compare results if I did repeat …

Answer: Cross-validation with multiple control subgroups in limma by Gordon Smyth 52k

limma doesn't do cross-validation or resampling. Like most classical linear modeling procedures in statistics, limma uses a statistical mod…

Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio by Robert Castelo ★ 3.4k

Hi Hervé, thank you very much for your input into how to properly build and manage TxDb objects. gDNAx has two main inputs, one or more BAM…

Comment: Biostrings: Error writing long reads (>200 kbps) with writeQualityScaledXStringS by Aidan ▴ 60

Quick update: this is fixed in a branch awaiting PR to Biostrings (https://github.com/Bioconductor/Biostrings/pull/122). Should be in `deve…

Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings? by Michael Love 43k

For statistical analysis plans, I recommend working with a local statistician or someone familiar with linear models in R. I have to reserv…

Votes

Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio

C: edgeR and lack of counts ID on CPM matrix

A: DESeq2 Following RSEM

A: importing RSEM data into DESeq2

A: Expected counts from RSEM in DESeq2

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