Bioconductor Biotype

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ssgsea GSVA biotype proteincoding msigdb

updated 6 months ago by tifaGis • 0 • written 16 months ago by snijesh ▴ 200

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1.9k

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grch37 transcripts biotype biomaRt ncrna

updated 6.6 years ago by James W. MacDonald 68k • written 6.7 years ago by sergio.martinezcuesta ▴ 10

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DESeq2 PCA rlog transformation biotype

7.0 years ago JoannaF ▴ 10

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1.2k

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scater sce biotype R

updated 7.1 years ago by Aaron Lun ★ 28k • written 7.1 years ago by thebadpenny • 0

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1.6k

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biomart TF biotype ensembl mus musculus

updated 7.2 years ago by Mike Smith ★ 6.6k • written 7.2 years ago by rbronste ▴ 60

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Answer: fast apply on RleList by James W. MacDonald 68k

There is already a 'mean' function that will dispatch on an `RleList` that you can use. I don't have a long `RleList` in hand to test it on…

Answer: Custom CDF creation for HTA 2.0 array using GTF annotation by James W. MacDonald 68k

It doesn't appear that Manhong Dai is working at UM any longer, and the webpage appears to have fallen into disrepair (for example, the lin…

Comment: how to use `arrayWeightsQuick()`? by matthew • 0

In the specific use-case I have in mind, `expression` is a simple `matrix` of log2 gene expression per sample, no missing values.

Comment: BiocParallel_1.40.1.tar.gz not available by Johan • 0

It worked. Thanks :)

Comment: Model performance for spline modelling of RNA-seq timecourses in edgeR by skiaphrene ▴ 10

Dear Gordon, Thank you very much for your prompt reply. I agree with the limma/edgeR perspective of including all potentially explanatory…

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Answer: BiocParallel_1.40.1.tar.gz not available

Modelling gene program dynamics across time with {lemur}

A: DESeq2 one group vs multiple groups comparison in presence of batch effect

Comment: BiocParallel_1.40.1.tar.gz not available

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