Bioconductor Biotype

Showing : biotype • reset

votes

replies

3.8k

views

ssgsea GSVA biotype proteincoding msigdb

updated 7 months ago by tifaGis • 0 • written 17 months ago by snijesh ▴ 200

votes

2.0k

views

grch37 transcripts biotype biomaRt ncrna

updated 6.7 years ago by James W. MacDonald 68k • written 6.7 years ago by sergio.martinezcuesta ▴ 10

vote

replies

2.2k

views

DESeq2 PCA rlog transformation biotype

7.0 years ago JoannaF ▴ 10

vote

replies

1.2k

views

scater sce biotype R

updated 7.1 years ago by Aaron Lun ★ 28k • written 7.1 years ago by thebadpenny • 0

vote

replies

1.7k

views

biomart TF biotype ensembl mus musculus

updated 7.3 years ago by Mike Smith ★ 6.6k • written 7.3 years ago by rbronste ▴ 60

5 results • Page 1 of 1

Recent ...

Replies

Comment: Discrepancies in normalised count data vs unnormalised by AMgroup • 0

Thank you for your reply Here are the count plots for one example CD44: normalised: ![enter image description here][1] unnormalised: !…

Comment: Discrepancies in normalised count data vs unnormalised by ATpoint ★ 4.8k

Please show examples using `plotCounts()`. Custom spreadsheets harbor the risk of parsing errors along the way which very often explains wh…

Comment: Cannot extract size factor from DESeq2 analysis by s.malik • 0

Dear Mike, using tximeta and following code, is this fine to extract normalized counts after `sizeFactors(dds)` gives NULL? `dds <- DESeq…

Comment: Design formula for circadian time-course data for vst() function by Vishnu • 0

Thank you so much for your reply.

Comment: Analyzing TnSeq data with DESeq2 by Tom • 0

[Doncaster Locksmith][1] delivers trusted, efficient security services tailored to your needs. Analyzing TnSeq data with DESeq2 may uncover…

Votes

Answer: How to combine two DESeq2 objects (dds) for analysis

How to combine two DESeq2 objects (dds) for analysis

How can I correctly use phyloseq with Docker?

A: DESeq2::sizeFactors() function does not output the sizeFactor table.

Comment: Filtering after DESeq

Awards • All

Great Question to inzirio ▴ 10